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The map label for this gene is sdhD [H]

Identifier: 218928278

GI number: 218928278

Start: 1253771

End: 1254118

Strand: Direct

Name: sdhD [H]

Synonym: YPO1110

Alternate gene names: 218928278

Gene position: 1253771-1254118 (Clockwise)

Preceding gene: 218928277

Following gene: 218928279

Centisome position: 26.94

GC content: 45.69

Gene sequence:

>348_bases
ATGGTAAGCAATGCTTCTGCGTTAGGGCGTAATGGAGTACACGATTGGTTGTTACTGCGTGCTTCTGCAATCGTCATCAC
CCTGTATGTCTTTTATATTCTGGGCTTCGTTGTGATTGTCCCAGACATCACCTATGAAATCTGGCGCGGTTTCTTCGCGT
CACACATCACAAAAGTATTTACGCTGCTGACATTGCTGTCGATTCTAGCTCACGCTTGGATCGGTCTATGGCAGGTATTG
ACGGACTATATAAAGCCACTGGCGATACGACTGGTGTTACAACTGGTCGTCGTGATTACGCTGTTGGTTTATTTATTGTA
TGGAACAATTGTGGTGTGGGGAGCTTAA

Upstream 100 bases:

>100_bases
ATTTTGGCTATCTCGAAGAGAATTTAGCCGTGGGTACCCGTTCTGCTCAAGTGGCAATGGGATTAACCCTCGTGTTGTCA
GTTTTGGCTGGAGTCCTCGT

Downstream 100 bases:

>100_bases
ATGAATCTGCCAATCAGAGAGTTTGATGCAGTTGTTGTCGGTGCAGGTGGTGCCGGTATGCGTGCCGCCCTGCAAATTTC
ACAAATGGGCCTGTCTTGCG

Product: succinate dehydrogenase cytochrome b556 small membrane subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MVSNASALGRNGVHDWLLLRASAIVITLYVFYILGFVVIVPDITYEIWRGFFASHITKVFTLLTLLSILAHAWIGLWQVL
TDYIKPLAIRLVLQLVVVITLLVYLLYGTIVVWGA

Sequences:

>Translated_115_residues
MVSNASALGRNGVHDWLLLRASAIVITLYVFYILGFVVIVPDITYEIWRGFFASHITKVFTLLTLLSILAHAWIGLWQVL
TDYIKPLAIRLVLQLVVVITLLVYLLYGTIVVWGA
>Mature_115_residues
MVSNASALGRNGVHDWLLLRASAIVITLYVFYILGFVVIVPDITYEIWRGFFASHITKVFTLLTLLSILAHAWIGLWQVL
TDYIKPLAIRLVLQLVVVITLLVYLLYGTIVVWGA

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=114, Percent_Identity=69.2982456140351, Blast_Score=149, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 12958; Mature: 12958

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSNASALGRNGVHDWLLLRASAIVITLYVFYILGFVVIVPDITYEIWRGFFASHITKVF
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLTLLSILAHAWIGLWQVLTDYIKPLAIRLVLQLVVVITLLVYLLYGTIVVWGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVSNASALGRNGVHDWLLLRASAIVITLYVFYILGFVVIVPDITYEIWRGFFASHITKVF
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLTLLSILAHAWIGLWQVLTDYIKPLAIRLVLQLVVVITLLVYLLYGTIVVWGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]