Click here to switch to the map view.

The map label for this gene is traC [H]

Identifier: 218928259

GI number: 218928259

Start: 1236825

End: 1237784

Strand: Reverse

Name: traC [H]

Synonym: YPO1090

Alternate gene names: 218928259

Gene position: 1237784-1236825 (Counterclockwise)

Preceding gene: 218928260

Following gene: 218928258

Centisome position: 26.6

GC content: 51.67

Gene sequence:

>960_bases
ATGAGTAGGTTTGTTTCCGACATCATTCGCGCATCACAACACCACTGGAGCAATATCCTTTCCTCCTTAGCTATTCCTAT
TCCCCACCTTAACAAACATGGCCCCTGCCCCGTCTGCGGAGGTAAAGACCGTTTTCGTTTTGATGATAAAAAAGGGCGAG
GAACGTGGTTCTGCAACTATTGCGGGCACGGCGATGGTCTGGATTTGGTCACTCTGGTGCGACAATGTGATGTGATTCAG
GCCGCCAGAGAAATCTCCCGCTTAACAGACTTAGCCCCAACAGCGCCCGCCAAAGAAAGAACTGAACAGCCCCTTCACTC
AGACATGACACAAAAAGTCACTGCCCTGCTGGCTGCCTGTTCGCAGGGAACCAGTGATTACCTGTTGCATAAGGGCTTAA
ATCATCCAGTCTTTCTCATGCCCGCCAACAGTGCTAAAAATATTGGCGGGGTGCATTTTAATGTGGGCAGCATGGTGCTG
CCACTGGTGGATCTGAGTGGCAACACTACCGGTGCGCTGTTAATCAATCGCCGGGGAGAAAAGCGTTTACTGCCCGGCTC
GCGGATTAAATCTTCATTTATCCCCATCACTCACCACACTCTGTCGCAGACAATAATCATTACTGAAGGCTTTGCCACCG
GCCTCGTCATATCACGATTTGTCACCGCCACAGTTGTTGCCGCTATCTCAGCCACTAATCTGACCCAGGTTGCTGTGGCA
CTGCGTGAACGTTATCCCGACGCGCAGATTATTATCGCGGCGGATAACGACGTAACAAACTCTGACAACAATCCCGGCAA
ACAACAGGCGGAATACGCCGCTCTTGCAGTCAATGGCTTAGTGACCCTGCCACCCACCTGCGGCAAAGCTGACTGGGATG
ATTATCGCCAACAAGTCGGAACGGACGCCGCCCGTATCGAGTTTTTCCGCCAACTCTACAATCCCAGGGAATGGATATGA

Upstream 100 bases:

>100_bases
GATCCTACAGCGAAAGAACTGTTGCTATTTATTCTGGCTGAACGGCTGGATTTGCTGCAACTGATGCTGGATGAAGTGCC
GGATGCAGAGGAGGCTAACC

Downstream 100 bases:

>100_bases
AAACACCACTCATTCTGCTCGAACGCGAACCTGTGTCATTGACTACAAACCTGCCGTTGCGCAAAGGCTCCGACGGCTAT
AACACCCCGCAGGATTACAA

Product: putative prophage DNA primase

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDKKGRGTWFCNYCGHGDGLDLVTLVRQCDVIQ
AAREISRLTDLAPTAPAKERTEQPLHSDMTQKVTALLAACSQGTSDYLLHKGLNHPVFLMPANSAKNIGGVHFNVGSMVL
PLVDLSGNTTGALLINRRGEKRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAISATNLTQVAVA
LRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKADWDDYRQQVGTDAARIEFFRQLYNPREWI

Sequences:

>Translated_319_residues
MSRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDKKGRGTWFCNYCGHGDGLDLVTLVRQCDVIQ
AAREISRLTDLAPTAPAKERTEQPLHSDMTQKVTALLAACSQGTSDYLLHKGLNHPVFLMPANSAKNIGGVHFNVGSMVL
PLVDLSGNTTGALLINRRGEKRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAISATNLTQVAVA
LRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKADWDDYRQQVGTDAARIEFFRQLYNPREWI
>Mature_318_residues
SRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDKKGRGTWFCNYCGHGDGLDLVTLVRQCDVIQA
AREISRLTDLAPTAPAKERTEQPLHSDMTQKVTALLAACSQGTSDYLLHKGLNHPVFLMPANSAKNIGGVHFNVGSMVLP
LVDLSGNTTGALLINRRGEKRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAISATNLTQVAVAL
RERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKADWDDYRQQVGTDAARIEFFRQLYNPREWI

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4643

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 34875; Mature: 34744

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDKKGRGTWFCNY
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEE
CGHGDGLDLVTLVRQCDVIQAAREISRLTDLAPTAPAKERTEQPLHSDMTQKVTALLAAC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHH
SQGTSDYLLHKGLNHPVFLMPANSAKNIGGVHFNVGSMVLPLVDLSGNTTGALLINRRGE
HCCCHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCHHEEEEEECCCCCCEEEEEECCCC
KRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAISATNLTQVAVA
CCCCCCCHHHHCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKADWDDYRQQVG
HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHC
TDAARIEFFRQLYNPREWI
CHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRFVSDIIRASQHHWSNILSSLAIPIPHLNKHGPCPVCGGKDRFRFDDKKGRGTWFCNY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEE
CGHGDGLDLVTLVRQCDVIQAAREISRLTDLAPTAPAKERTEQPLHSDMTQKVTALLAAC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHH
SQGTSDYLLHKGLNHPVFLMPANSAKNIGGVHFNVGSMVLPLVDLSGNTTGALLINRRGE
HCCCHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCHHEEEEEECCCCCCEEEEEECCCC
KRLLPGSRIKSSFIPITHHTLSQTIIITEGFATGLVISRFVTATVVAAISATNLTQVAVA
CCCCCCCHHHHCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRERYPDAQIIIAADNDVTNSDNNPGKQQAEYAALAVNGLVTLPPTCGKADWDDYRQQVG
HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHC
TDAARIEFFRQLYNPREWI
CHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]