Click here to switch to the map view.

The map label for this gene is arpB [H]

Identifier: 218928172

GI number: 218928172

Start: 1116620

End: 1118110

Strand: Reverse

Name: arpB [H]

Synonym: YPO1002

Alternate gene names: 218928172

Gene position: 1118110-1116620 (Counterclockwise)

Preceding gene: 218928175

Following gene: 218928169

Centisome position: 24.03

GC content: 32.86

Gene sequence:

>1491_bases
ATGGATATTTTTTCAAGTTTTAATTTATACAATAAAGAATTGTATAGTAACAGCCCCACACACCCTGCCTTTGATAAAAG
TAAACCGTATATATCAGAATTAAAAAGTCGTGAAGAGAAAAATCTAAACGGTGAAGTCAACTTTAAAGACAATGTTGACA
AACTGATTATGTGCCGTCATCTATCAAGTCAATATATATTGGATTCATTATCCGATGAGGATACCGGAAAGGTTGATTTA
GATAAATTCTCATCCAAAGACATCATCGCAAACCGAATAACCAGCAACGTTGAAGAGCTTTACGAGCAACTTCAGTTGCA
AGCAAAAGAAATTTATTTTATTCCTAACAATGAATTTGGCATCTGTCTCAGTAAGATCTTTAAGAGTATGGAGAGAAAGT
CAGAAAATACTCAATCCATACTACTTGAGTCATTCAACCACGCGATGGCAGTAAGATTGAGAATCAAGGAAAATGAAAAC
AACAACACGAAAAGGTACGTCATTAGTGTTTATGACCCCAACATGACTAATGTTACTGTCCGCTGTGAGGTGGATGATTT
AGTTAAAGTGAGAGATTTTCAGGTGAAGGATTTTATTAATCATCATTTATTTGGCAACTTTTACAAGAGCTACAACCCAA
CTGAATCAAGTGAAATATCAACCCTTTATATTTGTAAAAAACCAGCTAACGAAAGTGTTCCTGAGTGTACAGGGAAAAAA
ATTACATTTTATGATTGGATAGCCTTACCTGCCTCGTCTATTAATTTATACACTTTCCTCATTGAGGGATTCTCACAAGA
AATTAAAAATCTAAAAAATCAATTAGAAATAATATATAAGAAAAACCCGGAAAAGCTGATGGAAATACTTACCGCTAAAA
GTACCGATGGAATAATGGGTTTTGAACAAGCATTACTTAATGATCACGCTGATGCCATAAACGCATTTGGCGAGCTGCTA
CAATTAGTTCCCGAAAACAAACGCAGTGAATTACTTGTAAATAATAAAAAAACAAAGTACACATTATTTGATATAGTTTG
TTCTAGAGAAAAAAATAAAACAACAATGGCATTCAAAAATATAGTGTCACTTATCTCTAAAAATGAGCGTTATAAATTAA
TAGAATCAAAAGTAAACATACTTGATACTGTTATTAATTCACTTATTACCAAAAAAGACAGTAGTCATCTTAACGAAATT
TTTGAATTAATCTCATTAGCGCCAGAAGAGCATGTCATCAACTTACTGTCCAATATAGATATAACGCAATCTCTTGAATA
TTCGTTATATCACAATGATACTAAATCGATAAATATCATCACTAAAATGCTCAAGGGATTATCTGAACAAGGTCGGGAAA
ATATACCTTTTCTGAGAAAATTAGATGAGTCTATAGTGAATATGTATATCCAACTCGGTAAAAAAATAGCCGTTTCTGCC
TACCGTGAATTATTGGCACTGAAACCGGGAACGCTCAAAGAGAGTAAATAG

Upstream 100 bases:

>100_bases
TCATTAATATACAGATTTTACCTTATTTTATATTTAGATGACTTACTAGAAAATATCAACTACATATTTGATGATGCCGT
CAAAAAACATAAGGTGAAAT

Downstream 100 bases:

>100_bases
CCATTCAGTCACTGCCCCCAAAGAGTCACCCATACCCACCGGTCTTAACCGGCGGGTATGGGCTTTATGACAAAACAGCA
TTGTGACAAAACAGCATTAA

Product: enterotoxin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MDIFSSFNLYNKELYSNSPTHPAFDKSKPYISELKSREEKNLNGEVNFKDNVDKLIMCRHLSSQYILDSLSDEDTGKVDL
DKFSSKDIIANRITSNVEELYEQLQLQAKEIYFIPNNEFGICLSKIFKSMERKSENTQSILLESFNHAMAVRLRIKENEN
NNTKRYVISVYDPNMTNVTVRCEVDDLVKVRDFQVKDFINHHLFGNFYKSYNPTESSEISTLYICKKPANESVPECTGKK
ITFYDWIALPASSINLYTFLIEGFSQEIKNLKNQLEIIYKKNPEKLMEILTAKSTDGIMGFEQALLNDHADAINAFGELL
QLVPENKRSELLVNNKKTKYTLFDIVCSREKNKTTMAFKNIVSLISKNERYKLIESKVNILDTVINSLITKKDSSHLNEI
FELISLAPEEHVINLLSNIDITQSLEYSLYHNDTKSINIITKMLKGLSEQGRENIPFLRKLDESIVNMYIQLGKKIAVSA
YRELLALKPGTLKESK

Sequences:

>Translated_496_residues
MDIFSSFNLYNKELYSNSPTHPAFDKSKPYISELKSREEKNLNGEVNFKDNVDKLIMCRHLSSQYILDSLSDEDTGKVDL
DKFSSKDIIANRITSNVEELYEQLQLQAKEIYFIPNNEFGICLSKIFKSMERKSENTQSILLESFNHAMAVRLRIKENEN
NNTKRYVISVYDPNMTNVTVRCEVDDLVKVRDFQVKDFINHHLFGNFYKSYNPTESSEISTLYICKKPANESVPECTGKK
ITFYDWIALPASSINLYTFLIEGFSQEIKNLKNQLEIIYKKNPEKLMEILTAKSTDGIMGFEQALLNDHADAINAFGELL
QLVPENKRSELLVNNKKTKYTLFDIVCSREKNKTTMAFKNIVSLISKNERYKLIESKVNILDTVINSLITKKDSSHLNEI
FELISLAPEEHVINLLSNIDITQSLEYSLYHNDTKSINIITKMLKGLSEQGRENIPFLRKLDESIVNMYIQLGKKIAVSA
YRELLALKPGTLKESK
>Mature_496_residues
MDIFSSFNLYNKELYSNSPTHPAFDKSKPYISELKSREEKNLNGEVNFKDNVDKLIMCRHLSSQYILDSLSDEDTGKVDL
DKFSSKDIIANRITSNVEELYEQLQLQAKEIYFIPNNEFGICLSKIFKSMERKSENTQSILLESFNHAMAVRLRIKENEN
NNTKRYVISVYDPNMTNVTVRCEVDDLVKVRDFQVKDFINHHLFGNFYKSYNPTESSEISTLYICKKPANESVPECTGKK
ITFYDWIALPASSINLYTFLIEGFSQEIKNLKNQLEIIYKKNPEKLMEILTAKSTDGIMGFEQALLNDHADAINAFGELL
QLVPENKRSELLVNNKKTKYTLFDIVCSREKNKTTMAFKNIVSLISKNERYKLIESKVNILDTVINSLITKKDSSHLNEI
FELISLAPEEHVINLLSNIDITQSLEYSLYHNDTKSINIITKMLKGLSEQGRENIPFLRKLDESIVNMYIQLGKKIAVSA
YRELLALKPGTLKESK

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 ANK repeats [H]

Homologues:

Organism=Escherichia coli, GI1790447, Length=375, Percent_Identity=24.2666666666667, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR012927 [H]

Pfam domain/function: PF07906 Toxin_15 [H]

EC number: NA

Molecular weight: Translated: 57147; Mature: 57147

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIFSSFNLYNKELYSNSPTHPAFDKSKPYISELKSREEKNLNGEVNFKDNVDKLIMCRH
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
LSSQYILDSLSDEDTGKVDLDKFSSKDIIANRITSNVEELYEQLQLQAKEIYFIPNNEFG
CCHHHHHHHCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHH
ICLSKIFKSMERKSENTQSILLESFNHAMAVRLRIKENENNNTKRYVISVYDPNMTNVTV
HHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEE
RCEVDDLVKVRDFQVKDFINHHLFGNFYKSYNPTESSEISTLYICKKPANESVPECTGKK
EECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCE
ITFYDWIALPASSINLYTFLIEGFSQEIKNLKNQLEIIYKKNPEKLMEILTAKSTDGIMG
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHH
FEQALLNDHADAINAFGELLQLVPENKRSELLVNNKKTKYTLFDIVCSREKNKTTMAFKN
HHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEHHHHHHCCCCCCHHHHHHH
IVSLISKNERYKLIESKVNILDTVINSLITKKDSSHLNEIFELISLAPEEHVINLLSNID
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCC
ITQSLEYSLYHNDTKSINIITKMLKGLSEQGRENIPFLRKLDESIVNMYIQLGKKIAVSA
HHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YRELLALKPGTLKESK
HHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDIFSSFNLYNKELYSNSPTHPAFDKSKPYISELKSREEKNLNGEVNFKDNVDKLIMCRH
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
LSSQYILDSLSDEDTGKVDLDKFSSKDIIANRITSNVEELYEQLQLQAKEIYFIPNNEFG
CCHHHHHHHCCCCCCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHH
ICLSKIFKSMERKSENTQSILLESFNHAMAVRLRIKENENNNTKRYVISVYDPNMTNVTV
HHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEE
RCEVDDLVKVRDFQVKDFINHHLFGNFYKSYNPTESSEISTLYICKKPANESVPECTGKK
EECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCE
ITFYDWIALPASSINLYTFLIEGFSQEIKNLKNQLEIIYKKNPEKLMEILTAKSTDGIMG
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHH
FEQALLNDHADAINAFGELLQLVPENKRSELLVNNKKTKYTLFDIVCSREKNKTTMAFKN
HHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEEHHHHHHCCCCCCHHHHHHH
IVSLISKNERYKLIESKVNILDTVINSLITKKDSSHLNEIFELISLAPEEHVINLLSNID
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCC
ITQSLEYSLYHNDTKSINIITKMLKGLSEQGRENIPFLRKLDESIVNMYIQLGKKIAVSA
HHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YRELLALKPGTLKESK
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]