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The map label for this gene is agaC [H]

Identifier: 218928011

GI number: 218928011

Start: 915224

End: 916012

Strand: Direct

Name: agaC [H]

Synonym: YPO0835

Alternate gene names: 218928011

Gene position: 915224-916012 (Clockwise)

Preceding gene: 218928010

Following gene: 218928012

Centisome position: 19.67

GC content: 51.33

Gene sequence:

>789_bases
ATGCTTTTTGAAGCTACGTTAGTCGGAATCTGGGCCTTCTTGTGCGGTATCGACAAGTATGACGTTGCCCTGAATATTCA
CCGCCCGTTGATCACCGGCCCTGTTGTCGGTTTGATCATGGGCAATATGGAAGTGGGTTTAATCGCAGGTGCAACACTGG
AGCTGGCTTGGCTCGGCCTGGTACCGAATGCGGGGGCTCAGCCACCCGATGTGACCATGGGGACTATCGCCGCAGTTGCC
TTTGCGGTGATGACCGGCCAGTCGCCAGAAGTGGCAATGGGCGTTGGTATGCCAATTGCGGTCCTGATGCAGATGATTAT
TATCGGTTTCTTTGCCATGACAGCGTTCACCATGGGCAGAGCAGATAAGTATGCAGAGCAGGCAGATACGGCGGGCATAT
CGCGCTTGTTGATAGGCACGCTACTCACCCGGTCGATGCTCTACTTTGTGATCGCCTTTGTCACCGTCTACTTCGGTGAA
CATGCGGCAACCTGGATTGATGAAAATACACCAACCGCCCTGTTAGAAGGCTTAGGTATCGGTGCGAAGATGGTTCCGGC
AATCGGCTTTGCTATGTTGCTGAAAATTATGTGGTCGAAAGAAGTGGCTGGTGTGTTCTTTATCGGCTTTGTGATGACGA
CTTACCTGAAACTGCCAATCATGGCTATCGCCATTCTGGGTGCTGCTGTTGCTGTCCTGTACTACTTCTTCAGTGGCAAC
AATAACGGCAGCAATAACAACGGTAACAACACCAACAAACAACCAGAGGATTTCGAAGATGGCATCTGA

Upstream 100 bases:

>100_bases
AACACACCAGACCAAACGCCAATCAATGTGATTGAGCTGGCCGCCAGGGCATAAATCGACGACTTATTACGCCAAGACAT
AGGGAATTAAAGGATAAATT

Downstream 100 bases:

>100_bases
TATCACCGTAGATAAAGACCACACGGCAAAAGCGAAAACGGACAGCCTGGTGGACAAAATTGATTCCTATCAGGATCTTG
AAGTTCGTAAAGTGGTTACC

Product: putative PTS permease

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLFEATLVGIWAFLCGIDKYDVALNIHRPLITGPVVGLIMGNMEVGLIAGATLELAWLGLVPNAGAQPPDVTMGTIAAVA
FAVMTGQSPEVAMGVGMPIAVLMQMIIIGFFAMTAFTMGRADKYAEQADTAGISRLLIGTLLTRSMLYFVIAFVTVYFGE
HAATWIDENTPTALLEGLGIGAKMVPAIGFAMLLKIMWSKEVAGVFFIGFVMTTYLKLPIMAIAILGAAVAVLYYFFSGN
NNGSNNNGNNTNKQPEDFEDGI

Sequences:

>Translated_262_residues
MLFEATLVGIWAFLCGIDKYDVALNIHRPLITGPVVGLIMGNMEVGLIAGATLELAWLGLVPNAGAQPPDVTMGTIAAVA
FAVMTGQSPEVAMGVGMPIAVLMQMIIIGFFAMTAFTMGRADKYAEQADTAGISRLLIGTLLTRSMLYFVIAFVTVYFGE
HAATWIDENTPTALLEGLGIGAKMVPAIGFAMLLKIMWSKEVAGVFFIGFVMTTYLKLPIMAIAILGAAVAVLYYFFSGN
NNGSNNNGNNTNKQPEDFEDGI
>Mature_262_residues
MLFEATLVGIWAFLCGIDKYDVALNIHRPLITGPVVGLIMGNMEVGLIAGATLELAWLGLVPNAGAQPPDVTMGTIAAVA
FAVMTGQSPEVAMGVGMPIAVLMQMIIIGFFAMTAFTMGRADKYAEQADTAGISRLLIGTLLTRSMLYFVIAFVTVYFGE
HAATWIDENTPTALLEGLGIGAKMVPAIGFAMLLKIMWSKEVAGVFFIGFVMTTYLKLPIMAIAILGAAVAVLYYFFSGN
NNGSNNNGNNTNKQPEDFEDGI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=251, Percent_Identity=33.4661354581673, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1788121, Length=241, Percent_Identity=26.9709543568465, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 27892; Mature: 27892

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFEATLVGIWAFLCGIDKYDVALNIHRPLITGPVVGLIMGNMEVGLIAGATLELAWLGL
CCCHHHHHHHHHHHHCCCCHHEEEEECCCHHHHHHHHHHHCCCCEEEEECCHHHHHEEEE
VPNAGAQPPDVTMGTIAAVAFAVMTGQSPEVAMGVGMPIAVLMQMIIIGFFAMTAFTMGR
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ADKYAEQADTAGISRLLIGTLLTRSMLYFVIAFVTVYFGEHAATWIDENTPTALLEGLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHCCC
GAKMVPAIGFAMLLKIMWSKEVAGVFFIGFVMTTYLKLPIMAIAILGAAVAVLYYFFSGN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NNGSNNNGNNTNKQPEDFEDGI
CCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MLFEATLVGIWAFLCGIDKYDVALNIHRPLITGPVVGLIMGNMEVGLIAGATLELAWLGL
CCCHHHHHHHHHHHHCCCCHHEEEEECCCHHHHHHHHHHHCCCCEEEEECCHHHHHEEEE
VPNAGAQPPDVTMGTIAAVAFAVMTGQSPEVAMGVGMPIAVLMQMIIIGFFAMTAFTMGR
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ADKYAEQADTAGISRLLIGTLLTRSMLYFVIAFVTVYFGEHAATWIDENTPTALLEGLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHCCC
GAKMVPAIGFAMLLKIMWSKEVAGVFFIGFVMTTYLKLPIMAIAILGAAVAVLYYFFSGN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NNGSNNNGNNTNKQPEDFEDGI
CCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]