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The map label for this gene is rfaQ [H]

Identifier: 218927617

GI number: 218927617

Start: 434734

End: 435774

Strand: Direct

Name: rfaQ [H]

Synonym: YPO0416

Alternate gene names: 218927617

Gene position: 434734-435774 (Clockwise)

Preceding gene: 218927616

Following gene: 218927618

Centisome position: 9.34

GC content: 46.69

Gene sequence:

>1041_bases
GTGATTAAGTTACGGCATTTCGGCGATGTTCTACTGACGACGCCGCTACTGAGTACGCTGAAAGCCAATTATCCGCAGGC
TAAAATCGATGTACTGCTGTATGGCGGTACGCAGGATATGTTGCGTGAAAACAAGGCGATCAATCATACCTTTATTGTTG
ATCGGGGCCTGAAGCATGCAGGATTAAAGGCGCAAATCAGTGGCGAAAAAGCACTGTTTAGCGCCCTAAAAAAACAACAT
TATGATTTGATTCTTAATTTATCCGATCAATGGCGGGCTGCGGCGTATTGCCGTTTGTTAAAACCCACGTTTAGTATCGG
TTTCCACTACCCAAAACGGGACAATTGGCTCTGGCGTTACTGCCATTCCACATTGGTTGAGATCCCTAATGCTGCAGAAC
GGCACACGGTACTCAATAATCTGGATATTCTCTCACCACTACAACTGACCGACATCAGGACCGACGTCACCATGTCCTAT
GGGCCGCATGATATCGAGCGGGCAAAGCAGTTGTGCCAACAGCATAATATTGAACACTATATTTTGATTCAGCCTTCCGC
CCGCTGGAAATTCAAAACCTGGGCCAGCGAATCCTTCAGTGAATTGATCAACCACCTCACTCAACAAGGTGAAACTGTTC
TGCTGACGGGCAGTAAAGATCAGGCTGAATTGGATTACATCGCTGAGATTATTGCTGGCTGCACACAACCGGAAAAGGTG
ATCAATTTATCGGGTCAATTGGCATTGCCTGAACTGGCGGTCTTAATTGATAACGCCAAATTATTTATTGGTGTTGATTC
TGTGGCAATGCATATGGCTGCTGCGTTACAGACGCCAGCAGTGGTACTATTTGGCCCGAGTAATCTTAATCAATGGCACC
CGTGGCAGGCTCCACATACTTTACTCTGGGCTGGCAATTACCGCACTTTGCCGCATCCCAATGAAATAGATACTGACACT
ACTGATCGCTATCTGAACGCAATCCCAGTTAGTGATGTCATAGACGCAGTTGATTCCTGGCGAGTTGCCAAAGGGAATTA
G

Upstream 100 bases:

>100_bases
AGCATCACCTGCCGGGCAACTTTCTGCTCCCGCTTCTCAAACCGGTGCCAGCCACTTGCCGGAAGTACTGCGGAATAAAG
AGCATGTTGCGCGCATTTTA

Downstream 100 bases:

>100_bases
TGGGTCAGTCGCTTTATTTTTCCTAACCAGCTCGAGCTGAGAAAATTATGACAACTTTATCACCGGCAATTCCGGTCAAT
CGCCGTAGTGAAATGCTGTG

Product: putative lipopolysaccharide core biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MIKLRHFGDVLLTTPLLSTLKANYPQAKIDVLLYGGTQDMLRENKAINHTFIVDRGLKHAGLKAQISGEKALFSALKKQH
YDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDNWLWRYCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSY
GPHDIERAKQLCQQHNIEHYILIQPSARWKFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKV
INLSGQLALPELAVLIDNAKLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDT
TDRYLNAIPVSDVIDAVDSWRVAKGN

Sequences:

>Translated_346_residues
MIKLRHFGDVLLTTPLLSTLKANYPQAKIDVLLYGGTQDMLRENKAINHTFIVDRGLKHAGLKAQISGEKALFSALKKQH
YDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDNWLWRYCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSY
GPHDIERAKQLCQQHNIEHYILIQPSARWKFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKV
INLSGQLALPELAVLIDNAKLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDT
TDRYLNAIPVSDVIDAVDSWRVAKGN
>Mature_346_residues
MIKLRHFGDVLLTTPLLSTLKANYPQAKIDVLLYGGTQDMLRENKAINHTFIVDRGLKHAGLKAQISGEKALFSALKKQH
YDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDNWLWRYCHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSY
GPHDIERAKQLCQQHNIEHYILIQPSARWKFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKV
INLSGQLALPELAVLIDNAKLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHTLLWAGNYRTLPHPNEIDTDT
TDRYLNAIPVSDVIDAVDSWRVAKGN

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=336, Percent_Identity=39.8809523809524, Blast_Score=238, Evalue=3e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 39070; Mature: 39070

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLRHFGDVLLTTPLLSTLKANYPQAKIDVLLYGGTQDMLRENKAINHTFIVDRGLKHA
CEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCEEEEEECCCCCC
GLKAQISGEKALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDNWLWRY
CCEEEECCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHH
CHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSYGPHDIERAKQLCQQHNIEHY
HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHCCCCEE
ILIQPSARWKFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKV
EEEECCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHH
INLSGQLALPELAVLIDNAKLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHT
HCCCCCCCCCEEEEEEECCEEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCE
LLWAGNYRTLPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN
EEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCEECCCC
>Mature Secondary Structure
MIKLRHFGDVLLTTPLLSTLKANYPQAKIDVLLYGGTQDMLRENKAINHTFIVDRGLKHA
CEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCEEEEEECCCCCC
GLKAQISGEKALFSALKKQHYDLILNLSDQWRAAAYCRLLKPTFSIGFHYPKRDNWLWRY
CCEEEECCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHH
CHSTLVEIPNAAERHTVLNNLDILSPLQLTDIRTDVTMSYGPHDIERAKQLCQQHNIEHY
HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHCCCCEE
ILIQPSARWKFKTWASESFSELINHLTQQGETVLLTGSKDQAELDYIAEIIAGCTQPEKV
EEEECCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHH
INLSGQLALPELAVLIDNAKLFIGVDSVAMHMAAALQTPAVVLFGPSNLNQWHPWQAPHT
HCCCCCCCCCEEEEEEECCEEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCE
LLWAGNYRTLPHPNEIDTDTTDRYLNAIPVSDVIDAVDSWRVAKGN
EEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]