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The map label for this gene is ssaJ [H]

Identifier: 218927469

GI number: 218927469

Start: 263312

End: 264043

Strand: Direct

Name: ssaJ [H]

Synonym: YPO0263

Alternate gene names: 218927469

Gene position: 263312-264043 (Clockwise)

Preceding gene: 218927468

Following gene: 218927470

Centisome position: 5.66

GC content: 49.04

Gene sequence:

>732_bases
ATGAAATCTCTGCGGCAGATGTTAGCGATAGTCCTAATGACATTATCCCTTTCCGGTTGTGATATGGAGCTGTATAGCGG
GCTGTCTGAGGGGGAGGCCAATCAAATGCTGGCATTGCTGATGCTGCACCAAATTAACGCCGAAAAACAGATCGAAAAGA
GCGGGATGGTGGGGCTAACGGTCGATAAGCGGCAATTTATTAATGCCGTTGAGTTGCTACGACAGAATGGTTTCCCCCGA
CAGCGTTTTATCACGGTGGATGAGCTGTTTCCTGCTAACCAGTTAGTGACCTCTCCCACGCAAGAGCAGGCCAAGATGGT
TTTTCTGAAAGAACAGCAGTTGGAAAACATGTTGAGCCATATGGATGGGGTGATTCATGCCGATGTCACGGTGGCAATGC
CTATGTCGGTTGACGGGAAAAACCCGCTTCCGCATACCGCCTCGGTGTTTATCAAGTATTCGCCGGAAGTCAATTTACAA
AGCTATCAGTCGCAAATCAAAGGGTTGGTCCGCGATGCGGTTCCCGGTATTGATTACGCCAAGATAAGCGTGGTGATGCA
GCCTGCGAACTACCGTTTCAGTGCCTCAGAGGCAGAGCAACAACAGGGGCCACAAACCACGGTGCAATGGTTATTACGCC
ATGTAGGAATGGTGCAGAACATGGTGGGAGTAGCGTTTATCTCACTTATTGTATTGATGTTTGTAGGCTGGTTTTACTAT
CGACGTCGGTAA

Upstream 100 bases:

>100_bases
TGCAGCAGGCTGAATGGATGCACGCTTCACTGGCGATAGATTTAACCGCCAAAGTGGCCGGTGTGATGGGGCAGAACATC
AATAAATTGGTCAACATGCA

Downstream 100 bases:

>100_bases
AGGGCGGGCGGCGTCGGTAAAGGACGGGCGACGTAAATAAAGAGCGGGCGTCAGCAAAACGGTGTCTGTCAATAAAACGG
TATCCGACAGTAAATCAGAC

Product: type III secretion system apparatus lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQFINAVELLRQNGFPR
QRFITVDELFPANQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQ
SYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGWFYY
RRR

Sequences:

>Translated_243_residues
MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQFINAVELLRQNGFPR
QRFITVDELFPANQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQ
SYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGWFYY
RRR
>Mature_243_residues
MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQFINAVELLRQNGFPR
QRFITVDELFPANQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQ
SYQSQIKGLVRDAVPGIDYAKISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGWFYY
RRR

Specific function: Unknown

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 27428; Mature: 27428

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLT
CHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHCCCEEEE
VDKRQFINAVELLRQNGFPRQRFITVDELFPANQLVTSPTQEQAKMVFLKEQQLENMLSH
ECHHHHHHHHHHHHHCCCCHHHEEEHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
MDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYA
HCCCEECCEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE
KISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGWFYY
EEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRR
HCC
>Mature Secondary Structure
MKSLRQMLAIVLMTLSLSGCDMELYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLT
CHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHCCCEEEE
VDKRQFINAVELLRQNGFPRQRFITVDELFPANQLVTSPTQEQAKMVFLKEQQLENMLSH
ECHHHHHHHHHHHHHCCCCHHHEEEHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
MDGVIHADVTVAMPMSVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYA
HCCCEECCEEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE
KISVVMQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGWFYY
EEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRR
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]