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The map label for this gene is rfaE [C]

Identifier: 15921542

GI number: 15921542

Start: 1275870

End: 1276556

Strand: Direct

Name: rfaE [C]

Synonym: ST1279

Alternate gene names: 15921542

Gene position: 1275870-1276556 (Clockwise)

Preceding gene: 15921541

Following gene: 15921544

Centisome position: 47.35

GC content: 28.09

Gene sequence:

>687_bases
ATGTCTAATGAAATAAGAAATAGAGTAGAAAAATATATAAAAGGGATGGAAGAAAGATTACAAAAAATACCTAGTCATAT
CTATGAAAAATATCGTAAAGTACTAGATCTTGCTAAACAATATACAGAGGATGCAAAATATTATCTGAGTAAAGAAGATG
AAGTTACTGCGTTGGTTGATGTAGTTTATGCTGAAGGTTTATTAGATTCAGTTATATTTAATGAAAATCTTGATATAGAT
TCACAAATTTCTAAAAAAGTATTCGTAGGTGGCACATTTGATATATTACACCCTGGTCATATAGAATTTTTAAAAGAGGC
TTCTCGTTATGGAAGAGTCTATGTCTCTGTTGCAAGAGATAAAAACTCAGAAAAGGTAAAAGGGAGAAAACCAATAAATG
ATGAAAATCAAAGATTAGAAGTAGTAAAGAGCATTAGATATGTTTATGAAGCATTCTTAGGAGATGAAAAAGATTTTCTA
AAAAGTGTTGAAAGGGTAAAACCAGACATATTATTTTTAGGTCCTGATCAGCATGTTGATGAGAATAAATTAAAGGAAGA
GTTAAAGAAAAGAGGAATTGATAATATAGAAATAATAAGAATGAAAGAAAGAATAAATAATTGGTCTCATTCAAGCACTA
CATCAATAATTCAAGAAATAGTCAAAAGATATTGCAATCAAAGATAA

Upstream 100 bases:

>100_bases
TACGATTAAAGGAAGTATTTAATTATAAATTTAAAGAACCACCACATATTATTGTATTTCCTACAGATAAGTTACACTTC
ATGGAGGTAGAGGCTTTAAA

Downstream 100 bases:

>100_bases
ACTTCAATTTCTACCTCATCACCATCTTTAAGACTAAGTTTTTCTCTTAAATAGTAAGGTGATATAATTTCAATAACGCT
TTTTGGATGAGTAGTTCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSNEIRNRVEKYIKGMEERLQKIPSHIYEKYRKVLDLAKQYTEDAKYYLSKEDEVTALVDVVYAEGLLDSVIFNENLDID
SQISKKVFVGGTFDILHPGHIEFLKEASRYGRVYVSVARDKNSEKVKGRKPINDENQRLEVVKSIRYVYEAFLGDEKDFL
KSVERVKPDILFLGPDQHVDENKLKEELKKRGIDNIEIIRMKERINNWSHSSTTSIIQEIVKRYCNQR

Sequences:

>Translated_228_residues
MSNEIRNRVEKYIKGMEERLQKIPSHIYEKYRKVLDLAKQYTEDAKYYLSKEDEVTALVDVVYAEGLLDSVIFNENLDID
SQISKKVFVGGTFDILHPGHIEFLKEASRYGRVYVSVARDKNSEKVKGRKPINDENQRLEVVKSIRYVYEAFLGDEKDFL
KSVERVKPDILFLGPDQHVDENKLKEELKKRGIDNIEIIRMKERINNWSHSSTTSIIQEIVKRYCNQR
>Mature_227_residues
SNEIRNRVEKYIKGMEERLQKIPSHIYEKYRKVLDLAKQYTEDAKYYLSKEDEVTALVDVVYAEGLLDSVIFNENLDIDS
QISKKVFVGGTFDILHPGHIEFLKEASRYGRVYVSVARDKNSEKVKGRKPINDENQRLEVVKSIRYVYEAFLGDEKDFLK
SVERVKPDILFLGPDQHVDENKLKEELKKRGIDNIEIIRMKERINNWSHSSTTSIIQEIVKRYCNQR

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0615

COG function: function code MI; Cytidylyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004821
- InterPro:   IPR004820
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01467 CTP_transf_2 [H]

EC number: 2.7.-.- [C]

Molecular weight: Translated: 26820; Mature: 26689

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNEIRNRVEKYIKGMEERLQKIPSHIYEKYRKVLDLAKQYTEDAKYYLSKEDEVTALVD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VVYAEGLLDSVIFNENLDIDSQISKKVFVGGTFDILHPGHIEFLKEASRYGRVYVSVARD
HHHHHHHHHHHHHCCCCCCHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHCEEEEEEECC
KNSEKVKGRKPINDENQRLEVVKSIRYVYEAFLGDEKDFLKSVERVKPDILFLGPDQHVD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCC
ENKLKEELKKRGIDNIEIIRMKERINNWSHSSTTSIIQEIVKRYCNQR
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNEIRNRVEKYIKGMEERLQKIPSHIYEKYRKVLDLAKQYTEDAKYYLSKEDEVTALVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VVYAEGLLDSVIFNENLDIDSQISKKVFVGGTFDILHPGHIEFLKEASRYGRVYVSVARD
HHHHHHHHHHHHHCCCCCCHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHCEEEEEEECC
KNSEKVKGRKPINDENQRLEVVKSIRYVYEAFLGDEKDFLKSVERVKPDILFLGPDQHVD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCC
ENKLKEELKKRGIDNIEIIRMKERINNWSHSSTTSIIQEIVKRYCNQR
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]