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The map label for this gene is 15920520

Identifier: 15920520

GI number: 15920520

Start: 343521

End: 344081

Strand: Reverse

Name: 15920520

Synonym: ST0322

Alternate gene names: NA

Gene position: 344081-343521 (Counterclockwise)

Preceding gene: 15920524

Following gene: 15920519

Centisome position: 12.77

GC content: 22.46

Gene sequence:

>561_bases
ATGAAGTGCCCATATTGTGAAAGTGAAAATTTAGTTTGGGATTATAAAAATGGTAATTTAGTTTGTACAAGTTGCGGTTC
AGTCATTGATAAAATATATTACGAAGACTCTACTAGTTATGACGAAAGTGTTTATTTCCCAGAAACTTTATATTTCGATT
TTTTCTCGAAAACTAAAAGAATTAAAGAATTCAAGAATAAAACTCTTAAAGGTAGAAGAAACAAATTACAAAGTACAATT
ATATATAACGGTTCAGTAATTAAAGAGACCTCGTTGAATGCAATGAAATTTTTGGAAAATAACGAGAAATTATTATTATT
ATATGATACTATTGATAATCTTCCAGTATTTCATTCAAAAAGCGTTAAATATAAATTGGCAATTGCACTATATTTTTACG
ATAAAAAAGAATTTAATAGATTATCAAGATATTTGAATATTAGTAATAAATATATGAATAAAATATTATCTAAAATAAAA
ATTAAGGAAAAAACTAAAATACAGCATATTTTGAAAAATAAAATAGGAAAAAGGACTAATAATAGTTTTTATAATATTTA
A

Upstream 100 bases:

>100_bases
ATTTGCTATTATTAACATATCAATATCTTCATTCATCTGGGTCTCTATAGTAAGTTATACCTTATAAGTATCATATATAC
TTTAGGAATCCTATACACTC

Downstream 100 bases:

>100_bases
CAAAGCATTATTCTTTTTACTTCTTTAAATATAACTTTTATTATATAAAAATTAAGATATTGAGTTAAATCACAGAGTAT
AAATTCACGCAAAACACTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKCPYCESENLVWDYKNGNLVCTSCGSVIDKIYYEDSTSYDESVYFPETLYFDFFSKTKRIKEFKNKTLKGRRNKLQSTI
IYNGSVIKETSLNAMKFLENNEKLLLLYDTIDNLPVFHSKSVKYKLAIALYFYDKKEFNRLSRYLNISNKYMNKILSKIK
IKEKTKIQHILKNKIGKRTNNSFYNI

Sequences:

>Translated_186_residues
MKCPYCESENLVWDYKNGNLVCTSCGSVIDKIYYEDSTSYDESVYFPETLYFDFFSKTKRIKEFKNKTLKGRRNKLQSTI
IYNGSVIKETSLNAMKFLENNEKLLLLYDTIDNLPVFHSKSVKYKLAIALYFYDKKEFNRLSRYLNISNKYMNKILSKIK
IKEKTKIQHILKNKIGKRTNNSFYNI
>Mature_186_residues
MKCPYCESENLVWDYKNGNLVCTSCGSVIDKIYYEDSTSYDESVYFPETLYFDFFSKTKRIKEFKNKTLKGRRNKLQSTI
IYNGSVIKETSLNAMKFLENNEKLLLLYDTIDNLPVFHSKSVKYKLAIALYFYDKKEFNRLSRYLNISNKYMNKILSKIK
IKEKTKIQHILKNKIGKRTNNSFYNI

Specific function: Unknown

COG id: COG1405

COG function: function code K; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIB-type zinc finger [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000812
- InterPro:   IPR013137 [H]

Pfam domain/function: PF08271 TFIIB_Zn_Ribbon [H]

EC number: NA

Molecular weight: Translated: 22117; Mature: 22117

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS51134 ZF_TFIIB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCPYCESENLVWDYKNGNLVCTSCGSVIDKIYYEDSTSYDESVYFPETLYFDFFSKTKR
CCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHH
IKEFKNKTLKGRRNKLQSTIIYNGSVIKETSLNAMKFLENNEKLLLLYDTIDNLPVFHSK
HHHHHHHHHHHHHHHHHEEEEECCCEEECCCHHHHHHHCCCCEEEEEEECCCCCCCCCCC
SVKYKLAIALYFYDKKEFNRLSRYLNISNKYMNKILSKIKIKEKTKIQHILKNKIGKRTN
CCEEEEEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
NSFYNI
CCCCCC
>Mature Secondary Structure
MKCPYCESENLVWDYKNGNLVCTSCGSVIDKIYYEDSTSYDESVYFPETLYFDFFSKTKR
CCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHH
IKEFKNKTLKGRRNKLQSTIIYNGSVIKETSLNAMKFLENNEKLLLLYDTIDNLPVFHSK
HHHHHHHHHHHHHHHHHEEEEECCCEEECCCHHHHHHHCCCCEEEEEEECCCCCCCCCCC
SVKYKLAIALYFYDKKEFNRLSRYLNISNKYMNKILSKIKIKEKTKIQHILKNKIGKRTN
CCEEEEEEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
NSFYNI
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA