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The map label for this gene is 15920417

Identifier: 15920417

GI number: 15920417

Start: 256985

End: 257257

Strand: Reverse

Name: 15920417

Synonym: STS030

Alternate gene names: NA

Gene position: 257257-256985 (Counterclockwise)

Preceding gene: 161751103

Following gene: 15920416

Centisome position: 9.55

GC content: 32.23

Gene sequence:

>273_bases
ATGAGGATGACTATAGTGCAAGCAAAGATAGAAAATCCATTAAAGAGTTTAAAAACTGCAACAAATAAAATTGTATTAGT
GAAACTTAAGGATGGATCAGAATACGTTGGTAGATTAGAACAAAGTGATGGTACAATGAATTTAGTACTGAGAGACTGTA
TTGAGACAAGAGAAGGTACAGCTGAACCTGTTGCAAAATATGGAAGAGTTCTAATAAGAGGTAGCAATATACTTTTCATA
AGTGTTGATTACGAAGCTTTAATGGGAAAATAA

Upstream 100 bases:

>100_bases
TGTTAGTTCCACGTTTATATAAATTAAAAATTTTTCCCTTTAAAAAGGATGTGGCTAAGAGACAAGAACCCTTTTATATT
AGTCAGTAACAGAAAAGAAA

Downstream 100 bases:

>100_bases
TTTTATAAGAATACATCGGTGAGTGTATTCTAATGAGAAACATAAACGTGCAGTTAAGCCATTGGGTTGATATAGATTCG
TTAGAAGTGGAGCTTGTAGA

Product: small nuclear ribonucleoprotein

Products: NA

Alternate protein names: Small Nucleolar RNP Protein Sm; Small Nuclear Ribonucleoprotein; SnRNP Sm-Like Protein; LSM Family Small Nuclear Ribonucleoprotein; Small Nuclear Ribonucleoprotein LSM Family; Sm-Like Protein

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MRMTIVQAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGTAEPVAKYGRVLIRGSNILFI
SVDYEALMGK

Sequences:

>Translated_90_residues
MRMTIVQAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGTAEPVAKYGRVLIRGSNILFI
SVDYEALMGK
>Mature_90_residues
MRMTIVQAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGTAEPVAKYGRVLIRGSNILFI
SVDYEALMGK

Specific function: Unknown

COG id: COG1958

COG function: function code K; Small nuclear ribonucleoprotein (snRNP) homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10030; Mature: 10030

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMTIVQAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGT
CCEEEEHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCC
AEPVAKYGRVLIRGSNILFISVDYEALMGK
CCHHHHHCEEEEECCCEEEEEECHHHHCCC
>Mature Secondary Structure
MRMTIVQAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGT
CCEEEEHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCC
AEPVAKYGRVLIRGSNILFISVDYEALMGK
CCHHHHHCEEEEECCCEEEEEECHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA