Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
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Accession | NC_003065 |
Length | 214,233 |
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The map label for this gene is 16119897
Identifier: 16119897
GI number: 16119897
Start: 98863
End: 101373
Strand: Direct
Name: 16119897
Synonym: Atu6083
Alternate gene names: NA
Gene position: 98863-101373 (Clockwise)
Preceding gene: 159161969
Following gene: 16119898
Centisome position: 46.15
GC content: 61.49
Gene sequence:
>2511_bases ATGGCAGAAGAACCACCGCGTCCACTCCCACACGTTTATTTGCCCGGTCACGGGAACATCCAGGACTACACTGCCAGAGG CGGAGGTGGCGGCACAACCGTGCCGGTGCGCGATAGGGCTCAGCATGCTGTAAAGCTGACAGAAGCCCTTACCCGCGCAG TGGCAGACGCGGAAGCGCAATTGAGAGCCCGCGAGCCCGACCTTGCGGGTGGAACGCCAGGTTTCTATCTTGAGTTCGAA CTCCCTTCATCCCAGAGCGAGATCGTCGATAAGCTCGAAAACCGCCAGGGCAGGTTTCCGATCGAACTTGTTAGCGTTCG CCCGATAGGGGAGGGAGGGAACGCGATTGCCGCCACCGTCTTCGTCCCCGAGCGCCAGCGCGACTATTACCTCAAGAAGG TGGCCGAATATCGCGACCAGGACCGGATCCAACGGGTCGAGGTGGACGGTGAGATCGTCGAAAGAAACAACGGACCCAAG AATGAAGTGCTCGTGGCCTCACTTGAGACCGCGCGTCTTGCGGTGGCCAGATCCCTCTATACGGATGACGAGGCGTTCTT TCCGGTGCCCGGTACGGCCATCTGGTGGGAGGTCTGGCTGCGTCTCGGGACCAGAGATACCTTTGCGACGGCGGCTGAGC GACTGGAGCTTCCGGTGCGTGAACATGCCCTTCAGTTTCCGGAGCGCGAGGTGTTGATCGTCCACGCGAGCGCCGAAACC CTCGGGCGGATCATTGCGCACACCGACACGATCGCAGAGCTACGAACCGCCCGCGATACACCGGCCTTCTTTATGGAGAT GGACGGCGCCGAGCAACGCGCCTGGGCTGCGGAGACGGCGGGCCGCATTGTGGCCCCCGATGGTGACCGTCCCGCCGTCT GCCTTCTCGATTCAGGCTCTACCCGACGTCACCCTTTGATCCTCCCGGCGCTCGCAGCAGTGGATCAGCAGGCATTCGAT CCTGGCTGGAACGTCGAAGACACCAGTAATCAGGGGCACGGCGGACATGGCACCCAGCTTTCCGGCGTCGCCCTATACGG TGACCTGACCGATGTCCTCGCCGGAGCCGGGCAGATCATACTGACGCACCGGCTGGAGTCGGTGAAGATCCTGCCTGACC ATGGCGCGAATGACCCCGATCTCTTCGGCGCCATCACCGCCCAATCGATAGCGCGTGCCGAGATCGTCGCACCGGACCGG CCTCGCGCGATCTGCCTTGCCCTGACCAGTGACGGCGATCACTGGCGCGGCCGTCCGTCGTCATGGTCTGCGGCTCTCGA CGCACTTGCCTATGGCGCCGACAATGCGCCGCGCCTGATTGCGGTTTCTGCCGGCAATATTCGTGAGGACATTCATCAGA ACGATTATCTCGTTCGCAACGATATCACGCCGATCGAAAGCCCGGCCCAGGCGTGGAATGTGCTGACGGTCGGAGCATTT ACCGAGAAGACGGCGATCACCGACCCGGTCTTCAACGGATGGGGTGTCATGGCCCAGGTCGGCGATCTCATGCCACGTAG CCGTACCTCCGTCACTTGGAACCACGATTGGCCCCTCAAACCCGATGTTGTCTTCGAGGGTGGCAATCTGGGCGTAGATC CGGCGACGCTCATTGGTGATCACCTTGACGATCTCGCGCTGCTGACGACCTATCGGACGCCCGAGCACCGGGCGTTCACG ACGACCGGCGAGACCAGTGCAGCAACTGCGCTCGCGGCAAGGATGGGCGCGCAGATCCTGGGGCAGCGTCCTGATCTGTG GCCCGAGACGGTCAGAGCCCTGATCGTCCATTCGGCGGAATGGACACCGACGATGAAAGCCCATCTCGGCGGGATCAACA AGAATGCCTTGATTCGGCGTTACGGTTTCGGGGTTCCATCACTGGTGCGCGCCCTTGGAAGTCTCGATAACGATGTCACC ATGGTCATCGAGAACCAGATGCAACCATTCAAGACCGTGGGCAGCAAGATCGAGACCAAGGACATGGTCCTGCACGCGCT TCCCTGGCCAACAGAGGAACTCGAGGCTCTTGGTGAAACCCAGGTTCAGTTGCGGATCACGCTCAGCTATTTCATTGAGC CCAATCCTGGGGAGCGTGGCCAAACACGCCGTCACAGCTACGCTTCGCATGGATTGCGGTTTGCGTTGAAACCGGGCGAC GAGCGCCCCGATGTCTTCTTGCGTCGCATCAATGCCGCGGCCGGGGCCAGGCCGCCGGCAAGGGCGGCGGGAGATGCAGG CTGGACGCTTGGTCCCGTTCTTCGCAATCGGGGATCGCTGCATGGGGATATCTGGGAGGGAAACGCCGTCGAGCTCTCCC AGCGTGACGCTATCGCCATCTATCCGACTGGCGGATGGTGGCGGGAGAATACCGGTCAGAGAAGGGGTAATACAGCGGTT CGTTATGCACTTGTCGCAACGTTGCGAACTGCGGCTGATGTCGATCTCTACACCCCGATCAGCACCCCCATCCTTCCAGA GGTGGCGCCCGAAATTCTGATTGAGACTTAG
Upstream 100 bases:
>100_bases CGCCGCGAAACTCGTCGTCCTGTCCGACCGGGACCGCATCACCCAGAACGATCTGTCCCTCGCGATAGCCGAACGCAAAG GAGCGGCGTCGCAATAATCG
Downstream 100 bases:
>100_bases ACCCTCCCGCATTGGAGATATCGGTGAACATCCCAGACATGTTGCCTTCCCGTCAGTCACCCGACTCGATAGCTCATACG GGCGGATTCCGGCCCCACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 836; Mature: 835
Protein sequence:
>836_residues MAEEPPRPLPHVYLPGHGNIQDYTARGGGGGTTVPVRDRAQHAVKLTEALTRAVADAEAQLRAREPDLAGGTPGFYLEFE LPSSQSEIVDKLENRQGRFPIELVSVRPIGEGGNAIAATVFVPERQRDYYLKKVAEYRDQDRIQRVEVDGEIVERNNGPK NEVLVASLETARLAVARSLYTDDEAFFPVPGTAIWWEVWLRLGTRDTFATAAERLELPVREHALQFPEREVLIVHASAET LGRIIAHTDTIAELRTARDTPAFFMEMDGAEQRAWAAETAGRIVAPDGDRPAVCLLDSGSTRRHPLILPALAAVDQQAFD PGWNVEDTSNQGHGGHGTQLSGVALYGDLTDVLAGAGQIILTHRLESVKILPDHGANDPDLFGAITAQSIARAEIVAPDR PRAICLALTSDGDHWRGRPSSWSAALDALAYGADNAPRLIAVSAGNIREDIHQNDYLVRNDITPIESPAQAWNVLTVGAF TEKTAITDPVFNGWGVMAQVGDLMPRSRTSVTWNHDWPLKPDVVFEGGNLGVDPATLIGDHLDDLALLTTYRTPEHRAFT TTGETSAATALAARMGAQILGQRPDLWPETVRALIVHSAEWTPTMKAHLGGINKNALIRRYGFGVPSLVRALGSLDNDVT MVIENQMQPFKTVGSKIETKDMVLHALPWPTEELEALGETQVQLRITLSYFIEPNPGERGQTRRHSYASHGLRFALKPGD ERPDVFLRRINAAAGARPPARAAGDAGWTLGPVLRNRGSLHGDIWEGNAVELSQRDAIAIYPTGGWWRENTGQRRGNTAV RYALVATLRTAADVDLYTPISTPILPEVAPEILIET
Sequences:
>Translated_836_residues MAEEPPRPLPHVYLPGHGNIQDYTARGGGGGTTVPVRDRAQHAVKLTEALTRAVADAEAQLRAREPDLAGGTPGFYLEFE LPSSQSEIVDKLENRQGRFPIELVSVRPIGEGGNAIAATVFVPERQRDYYLKKVAEYRDQDRIQRVEVDGEIVERNNGPK NEVLVASLETARLAVARSLYTDDEAFFPVPGTAIWWEVWLRLGTRDTFATAAERLELPVREHALQFPEREVLIVHASAET LGRIIAHTDTIAELRTARDTPAFFMEMDGAEQRAWAAETAGRIVAPDGDRPAVCLLDSGSTRRHPLILPALAAVDQQAFD PGWNVEDTSNQGHGGHGTQLSGVALYGDLTDVLAGAGQIILTHRLESVKILPDHGANDPDLFGAITAQSIARAEIVAPDR PRAICLALTSDGDHWRGRPSSWSAALDALAYGADNAPRLIAVSAGNIREDIHQNDYLVRNDITPIESPAQAWNVLTVGAF TEKTAITDPVFNGWGVMAQVGDLMPRSRTSVTWNHDWPLKPDVVFEGGNLGVDPATLIGDHLDDLALLTTYRTPEHRAFT TTGETSAATALAARMGAQILGQRPDLWPETVRALIVHSAEWTPTMKAHLGGINKNALIRRYGFGVPSLVRALGSLDNDVT MVIENQMQPFKTVGSKIETKDMVLHALPWPTEELEALGETQVQLRITLSYFIEPNPGERGQTRRHSYASHGLRFALKPGD ERPDVFLRRINAAAGARPPARAAGDAGWTLGPVLRNRGSLHGDIWEGNAVELSQRDAIAIYPTGGWWRENTGQRRGNTAV RYALVATLRTAADVDLYTPISTPILPEVAPEILIET >Mature_835_residues AEEPPRPLPHVYLPGHGNIQDYTARGGGGGTTVPVRDRAQHAVKLTEALTRAVADAEAQLRAREPDLAGGTPGFYLEFEL PSSQSEIVDKLENRQGRFPIELVSVRPIGEGGNAIAATVFVPERQRDYYLKKVAEYRDQDRIQRVEVDGEIVERNNGPKN EVLVASLETARLAVARSLYTDDEAFFPVPGTAIWWEVWLRLGTRDTFATAAERLELPVREHALQFPEREVLIVHASAETL GRIIAHTDTIAELRTARDTPAFFMEMDGAEQRAWAAETAGRIVAPDGDRPAVCLLDSGSTRRHPLILPALAAVDQQAFDP GWNVEDTSNQGHGGHGTQLSGVALYGDLTDVLAGAGQIILTHRLESVKILPDHGANDPDLFGAITAQSIARAEIVAPDRP RAICLALTSDGDHWRGRPSSWSAALDALAYGADNAPRLIAVSAGNIREDIHQNDYLVRNDITPIESPAQAWNVLTVGAFT EKTAITDPVFNGWGVMAQVGDLMPRSRTSVTWNHDWPLKPDVVFEGGNLGVDPATLIGDHLDDLALLTTYRTPEHRAFTT TGETSAATALAARMGAQILGQRPDLWPETVRALIVHSAEWTPTMKAHLGGINKNALIRRYGFGVPSLVRALGSLDNDVTM VIENQMQPFKTVGSKIETKDMVLHALPWPTEELEALGETQVQLRITLSYFIEPNPGERGQTRRHSYASHGLRFALKPGDE RPDVFLRRINAAAGARPPARAAGDAGWTLGPVLRNRGSLHGDIWEGNAVELSQRDAIAIYPTGGWWRENTGQRRGNTAVR YALVATLRTAADVDLYTPISTPILPEVAPEILIET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: NA
Molecular weight: Translated: 91263; Mature: 91131
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEEPPRPLPHVYLPGHGNIQDYTARGGGGGTTVPVRDRAQHAVKLTEALTRAVADAEAQ CCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LRAREPDLAGGTPGFYLEFELPSSQSEIVDKLENRQGRFPIELVSVRPIGEGGNAIAATV HHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEEE FVPERQRDYYLKKVAEYRDQDRIQRVEVDGEIVERNNGPKNEVLVASLETARLAVARSLY EECCCHHHHHHHHHHHHHCHHHHEEEECCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHC TDDEAFFPVPGTAIWWEVWLRLGTRDTFATAAERLELPVREHALQFPEREVLIVHASAET CCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECHHH LGRIIAHTDTIAELRTARDTPAFFMEMDGAEQRAWAAETAGRIVAPDGDRPAVCLLDSGS HHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCEEECCCCCCCEEEEECCCC TRRHPLILPALAAVDQQAFDPGWNVEDTSNQGHGGHGTQLSGVALYGDLTDVLAGAGQII CCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCEEEECCHHHHHHCCCEEE LTHRLESVKILPDHGANDPDLFGAITAQSIARAEIVAPDRPRAICLALTSDGDHWRGRPS EEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCCCCCCCCCC SWSAALDALAYGADNAPRLIAVSAGNIREDIHQNDYLVRNDITPIESPAQAWNVLTVGAF HHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCCCCEEEECCCCCCCCCHHHCCEEEEECC TEKTAITDPVFNGWGVMAQVGDLMPRSRTSVTWNHDWPLKPDVVFEGGNLGVDPATLIGD CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHH HLDDLALLTTYRTPEHRAFTTTGETSAATALAARMGAQILGQRPDLWPETVRALIVHSAE CHHCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC WTPTMKAHLGGINKNALIRRYGFGVPSLVRALGSLDNDVTMVIENQMQPFKTVGSKIETK CCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCCH DMVLHALPWPTEELEALGETQVQLRITLSYFIEPNPGERGQTRRHSYASHGLRFALKPGD HEEEEECCCCHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEECCCC ERPDVFLRRINAAAGARPPARAAGDAGWTLGPVLRNRGSLHGDIWEGNAVELSQRDAIAI CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCEECCCCEEEECCCCEEEE YPTGGWWRENTGQRRGNTAVRYALVATLRTAADVDLYTPISTPILPEVAPEILIET EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHCHHHEECC >Mature Secondary Structure AEEPPRPLPHVYLPGHGNIQDYTARGGGGGTTVPVRDRAQHAVKLTEALTRAVADAEAQ CCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LRAREPDLAGGTPGFYLEFELPSSQSEIVDKLENRQGRFPIELVSVRPIGEGGNAIAATV HHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEEE FVPERQRDYYLKKVAEYRDQDRIQRVEVDGEIVERNNGPKNEVLVASLETARLAVARSLY EECCCHHHHHHHHHHHHHCHHHHEEEECCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHC TDDEAFFPVPGTAIWWEVWLRLGTRDTFATAAERLELPVREHALQFPEREVLIVHASAET CCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECHHH LGRIIAHTDTIAELRTARDTPAFFMEMDGAEQRAWAAETAGRIVAPDGDRPAVCLLDSGS HHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCEEECCCCCCCEEEEECCCC TRRHPLILPALAAVDQQAFDPGWNVEDTSNQGHGGHGTQLSGVALYGDLTDVLAGAGQII CCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCEEEECCHHHHHHCCCEEE LTHRLESVKILPDHGANDPDLFGAITAQSIARAEIVAPDRPRAICLALTSDGDHWRGRPS EEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCCCCCCCCCC SWSAALDALAYGADNAPRLIAVSAGNIREDIHQNDYLVRNDITPIESPAQAWNVLTVGAF HHHHHHHHHHCCCCCCCEEEEEECCCHHHHHCCCCEEEECCCCCCCCCHHHCCEEEEECC TEKTAITDPVFNGWGVMAQVGDLMPRSRTSVTWNHDWPLKPDVVFEGGNLGVDPATLIGD CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHH HLDDLALLTTYRTPEHRAFTTTGETSAATALAARMGAQILGQRPDLWPETVRALIVHSAE CHHCEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC WTPTMKAHLGGINKNALIRRYGFGVPSLVRALGSLDNDVTMVIENQMQPFKTVGSKIETK CCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCCH DMVLHALPWPTEELEALGETQVQLRITLSYFIEPNPGERGQTRRHSYASHGLRFALKPGD HEEEEECCCCHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEECCCC ERPDVFLRRINAAAGARPPARAAGDAGWTLGPVLRNRGSLHGDIWEGNAVELSQRDAIAI CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCEECCCCEEEECCCCEEEE YPTGGWWRENTGQRRGNTAVRYALVATLRTAADVDLYTPISTPILPEVAPEILIET EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHCHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]