Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184668
Identifier: 159184668
GI number: 159184668
Start: 1207142
End: 1207849
Strand: Direct
Name: 159184668
Synonym: Atu1213
Alternate gene names: NA
Gene position: 1207142-1207849 (Clockwise)
Preceding gene: 15888545
Following gene: 159184669
Centisome position: 42.48
GC content: 60.59
Gene sequence:
>708_bases ATGCTGATTTCGGATTTCGGGACGGCGGAGACCGCAAGCGTCCAGTCGCCGGCCGATCAGCTGGCCGGCACGCTGATTCT CCAGGCGAACGAGGAATGGCTCGATACCGCACTCGTCAATGCCACCGACAGCTGGTATCTGGCGCGCGAGGCGGAGACCT TGCCCGAGCATGAGGCCCCCGTTTTTTCCGCGCTGGTGCCGGACAGGAGCCGGGATCGCAACATGGCCTGCCTGATGGTG GGCCGCGACAAGGACGGTTATGGCGATCTGGCCGCGATGATGGGGCTTCCCAATACCGAATTCGACAAATGTGTTGCTTC CTATCCGGGTGTAGCCTCGGCCTGGGAGAATTTCCTCGCGCCTCACCGCAGCCAGACACCCTCGAAATTTTCCGTCAGCT ACGTGCCGCCGCGCGATCCGGAACTCGAGCCTTATGCCATCATGGTCAAGGAATCGAAGGTTCTCGATCTCATCAGCCGA AGTTTCAGTGGTTATGGCCTGAAGGGCGACGTCAAGCTGACGGCCAAGTCCTGCGGCCGTCCCGATGTCTACTGGTCGGC CGAAAAGCGCGAAATCACCTATTGCTACGAGCTTGGTAAATTCCAGGCGGAGCTGATCGCCGATCATCTCCTGAACAGCG TCACGGAAGACAAGGGCGCGGCCGGCGGGCAGATCCCCACGGCCGTCAATCTGGAACGCGAAATCTGA
Upstream 100 bases:
>100_bases TGCCTCCGGTCTTGATGGCCTCTCAGACGATCAACTGCAGCAGTCGGTCAATTTCGTCATCGGCAACGCGATCTTCTCGC TCTATCATGAGGGTGCGCGC
Downstream 100 bases:
>100_bases GGCTGGTTGCCGAACGCTGGTGAGCTGGCCTCCCTGATGGAGGAGAATGCCATGCCGAAGGTCGTCGTTCGCAATTTCGC CATTTCGCTTGACGGATATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MLISDFGTAETASVQSPADQLAGTLILQANEEWLDTALVNATDSWYLAREAETLPEHEAPVFSALVPDRSRDRNMACLMV GRDKDGYGDLAAMMGLPNTEFDKCVASYPGVASAWENFLAPHRSQTPSKFSVSYVPPRDPELEPYAIMVKESKVLDLISR SFSGYGLKGDVKLTAKSCGRPDVYWSAEKREITYCYELGKFQAELIADHLLNSVTEDKGAAGGQIPTAVNLEREI
Sequences:
>Translated_235_residues MLISDFGTAETASVQSPADQLAGTLILQANEEWLDTALVNATDSWYLAREAETLPEHEAPVFSALVPDRSRDRNMACLMV GRDKDGYGDLAAMMGLPNTEFDKCVASYPGVASAWENFLAPHRSQTPSKFSVSYVPPRDPELEPYAIMVKESKVLDLISR SFSGYGLKGDVKLTAKSCGRPDVYWSAEKREITYCYELGKFQAELIADHLLNSVTEDKGAAGGQIPTAVNLEREI >Mature_235_residues MLISDFGTAETASVQSPADQLAGTLILQANEEWLDTALVNATDSWYLAREAETLPEHEAPVFSALVPDRSRDRNMACLMV GRDKDGYGDLAAMMGLPNTEFDKCVASYPGVASAWENFLAPHRSQTPSKFSVSYVPPRDPELEPYAIMVKESKVLDLISR SFSGYGLKGDVKLTAKSCGRPDVYWSAEKREITYCYELGKFQAELIADHLLNSVTEDKGAAGGQIPTAVNLEREI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25789; Mature: 25789
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLISDFGTAETASVQSPADQLAGTLILQANEEWLDTALVNATDSWYLAREAETLPEHEAP CEECCCCCCCCCCCCCCHHHHCEEEEEECCHHHHHHHHHCCCCCEEEEECHHCCCCCCCC VFSALVPDRSRDRNMACLMVGRDKDGYGDLAAMMGLPNTEFDKCVASYPGVASAWENFLA CHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHC PHRSQTPSKFSVSYVPPRDPELEPYAIMVKESKVLDLISRSFSGYGLKGDVKLTAKSCGR CCCCCCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCEEEEECCCCC PDVYWSAEKREITYCYELGKFQAELIADHLLNSVTEDKGAAGGQIPTAVNLEREI CCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCC >Mature Secondary Structure MLISDFGTAETASVQSPADQLAGTLILQANEEWLDTALVNATDSWYLAREAETLPEHEAP CEECCCCCCCCCCCCCCHHHHCEEEEEECCHHHHHHHHHCCCCCEEEEECHHCCCCCCCC VFSALVPDRSRDRNMACLMVGRDKDGYGDLAAMMGLPNTEFDKCVASYPGVASAWENFLA CHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHC PHRSQTPSKFSVSYVPPRDPELEPYAIMVKESKVLDLISRSFSGYGLKGDVKLTAKSCGR CCCCCCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCEEEEECCCCC PDVYWSAEKREITYCYELGKFQAELIADHLLNSVTEDKGAAGGQIPTAVNLEREI CCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA