Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is creD [H]
Identifier: 159184640
GI number: 159184640
Start: 1147304
End: 1148689
Strand: Direct
Name: creD [H]
Synonym: Atu1155
Alternate gene names: 159184640
Gene position: 1147304-1148689 (Clockwise)
Preceding gene: 15888492
Following gene: 159184641
Centisome position: 40.38
GC content: 58.37
Gene sequence:
>1386_bases ATGCCGCGCGGCAATTTTGCCGCCAGCCTGCGTTCACCCGGCGCGAAGTTTCTGATGATAGGTTTCATTTCGTTGGTTCT GCTGGTTCCGCTCTTGCTCGTCTGGGGGCTGACGGAAGAGCGCGCCTCGCGGGCGAGGGAGGTTTCCGCCCGGATCGCGA ACGGGTGGGGCGGCGATCAGGTTGTGAACGGCCCTTATCTCGCCGTACCCTTCGATGTCGAACGTCGCCGCGAGGTCGAT GGCCGAACCATTGTGGACCGCACGACAGAGTGGGCGCTGGTCATGCCGGAAACGCTGCAGGTAACGGCCGACCTCAAGAC CGAGGAAAAGAAGCTCTCGATCTACAGCTTGCCTGTCTATAACGGTGCTCTCGTGCTCAAGGGCCGCTTCGGACAGGGCG TCCTGCAAGATCTCGCCCGTTTTGCCGGCACACCGCGTCTCGACAATGCCATCCTCGTCCTCAGCATAGGGGATATTACC GGCATAAGATCGAGCGCCGGGGTTCGCATAAACGGCGGCGCAGTTTTGCCCTTCGATCCCGGCATGCGCGATATGTCCGT TATCGCAAGCCGCGCCCTCGAAAATAACTCCATAAGATCAGATGCGGGCGTGCACAGGCAGATCGACAGGAACCTCATCG AGAGTGGCTTTGATTTCGATATCGCATTTTCGCTGAATGGTTCTGGCAGTTTCGCAGTTGCGCCGGCCGGCCAGACAACG AGCTTCACGGCAAAAGCCGACTGGCCGCATCCCGGTTTTGAAGGTTTGTTCCTGCCGGAGGTCAAAACGGTCACGGCTGC GGATTTCAACGCCAGCTGGACGATTCCCTATCTCGCAAGGGGAATAGATCGCGTGGTGGAGGGTCCGCGACTGCCGCTCT CCAACAGCCTGATGACGATCAATCTCGTGGAACCGGTGAAGTTCTACCAGGTCATCGCCCGGACACTGAAATATTCCATC GGCTTCATCTCGCTTGTCTTCCTCGCCGTCTTCATTGTGGAACTCAAGGGCGGCAGCGTTGTGCACTGGATACAATATGT GCTGACGGGTCTGGCGCTCATCGTCTTCTATGTGCTGCTGCTCGCATTAGCCGAACATACGGGTTTCACCGTTGCCTATG CCGCTGCCTCCTTTTCCACGGCGGCCCTGATTGCCTTTTATCTTGGCAGTGCCACCCGTAGTCGCAGAAACGGTCTTGCA CTTTTCAGTGTTCTGGCGGTGGCCTACGGTGTGATGTATCTGGTTCTGAACGAAGACGAATATGCGCTGCTGGCGGGCGC GGTCATATCGTTTATCGCCATCGCTGCAACCATGTTTGCGACGCGCAAAGTCGATTGGTCTGGAGCCGGCACCGCCGCGA ACAGCGAGTTCTCCAGCCGCACCTGA
Upstream 100 bases:
>100_bases CTTTTTCCGGTTCTGGCGCGATCATATTTAAGAGGATTTCCGAATGGTACATGAGACGGACAAAGACCCGGCGCCGGCGG TCGGGCCGCTTGCTTCAGCC
Downstream 100 bases:
>100_bases CGCGAGACCGCATGGTCTGAAAAGCGGGCTGCTTAACTTGCGGCCCGCTTTTTTGCTGTTTATAGGTGGATTACTCACCA CGGACCCGGTGAAATCCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 461; Mature: 460
Protein sequence:
>461_residues MPRGNFAASLRSPGAKFLMIGFISLVLLVPLLLVWGLTEERASRAREVSARIANGWGGDQVVNGPYLAVPFDVERRREVD GRTIVDRTTEWALVMPETLQVTADLKTEEKKLSIYSLPVYNGALVLKGRFGQGVLQDLARFAGTPRLDNAILVLSIGDIT GIRSSAGVRINGGAVLPFDPGMRDMSVIASRALENNSIRSDAGVHRQIDRNLIESGFDFDIAFSLNGSGSFAVAPAGQTT SFTAKADWPHPGFEGLFLPEVKTVTAADFNASWTIPYLARGIDRVVEGPRLPLSNSLMTINLVEPVKFYQVIARTLKYSI GFISLVFLAVFIVELKGGSVVHWIQYVLTGLALIVFYVLLLALAEHTGFTVAYAAASFSTAALIAFYLGSATRSRRNGLA LFSVLAVAYGVMYLVLNEDEYALLAGAVISFIAIAATMFATRKVDWSGAGTAANSEFSSRT
Sequences:
>Translated_461_residues MPRGNFAASLRSPGAKFLMIGFISLVLLVPLLLVWGLTEERASRAREVSARIANGWGGDQVVNGPYLAVPFDVERRREVD GRTIVDRTTEWALVMPETLQVTADLKTEEKKLSIYSLPVYNGALVLKGRFGQGVLQDLARFAGTPRLDNAILVLSIGDIT GIRSSAGVRINGGAVLPFDPGMRDMSVIASRALENNSIRSDAGVHRQIDRNLIESGFDFDIAFSLNGSGSFAVAPAGQTT SFTAKADWPHPGFEGLFLPEVKTVTAADFNASWTIPYLARGIDRVVEGPRLPLSNSLMTINLVEPVKFYQVIARTLKYSI GFISLVFLAVFIVELKGGSVVHWIQYVLTGLALIVFYVLLLALAEHTGFTVAYAAASFSTAALIAFYLGSATRSRRNGLA LFSVLAVAYGVMYLVLNEDEYALLAGAVISFIAIAATMFATRKVDWSGAGTAANSEFSSRT >Mature_460_residues PRGNFAASLRSPGAKFLMIGFISLVLLVPLLLVWGLTEERASRAREVSARIANGWGGDQVVNGPYLAVPFDVERRREVDG RTIVDRTTEWALVMPETLQVTADLKTEEKKLSIYSLPVYNGALVLKGRFGQGVLQDLARFAGTPRLDNAILVLSIGDITG IRSSAGVRINGGAVLPFDPGMRDMSVIASRALENNSIRSDAGVHRQIDRNLIESGFDFDIAFSLNGSGSFAVAPAGQTTS FTAKADWPHPGFEGLFLPEVKTVTAADFNASWTIPYLARGIDRVVEGPRLPLSNSLMTINLVEPVKFYQVIARTLKYSIG FISLVFLAVFIVELKGGSVVHWIQYVLTGLALIVFYVLLLALAEHTGFTVAYAAASFSTAALIAFYLGSATRSRRNGLAL FSVLAVAYGVMYLVLNEDEYALLAGAVISFIAIAATMFATRKVDWSGAGTAANSEFSSRT
Specific function: Unknown
COG id: COG4452
COG function: function code V; Inner membrane protein involved in colicin E2 resistance
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790862, Length=410, Percent_Identity=31.9512195121951, Blast_Score=201, Evalue=9e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010364 [H]
Pfam domain/function: PF06123 CreD [H]
EC number: NA
Molecular weight: Translated: 49775; Mature: 49644
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRGNFAASLRSPGAKFLMIGFISLVLLVPLLLVWGLTEERASRAREVSARIANGWGGDQ CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC VVNGPYLAVPFDVERRREVDGRTIVDRTTEWALVMPETLQVTADLKTEEKKLSIYSLPVY EECCCEEEEECCHHHHHCCCCCEEEECCCCEEEECCCEEEEEECCCCCCCEEEEEEECCC NGALVLKGRFGQGVLQDLARFAGTPRLDNAILVLSIGDITGIRSSAGVRINGGAVLPFDP CCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCEEECCCC GMRDMSVIASRALENNSIRSDAGVHRQIDRNLIESGFDFDIAFSLNGSGSFAVAPAGQTT CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCC SFTAKADWPHPGFEGLFLPEVKTVTAADFNASWTIPYLARGIDRVVEGPRLPLSNSLMTI EEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEE NLVEPVKFYQVIARTLKYSIGFISLVFLAVFIVELKGGSVVHWIQYVLTGLALIVFYVLL EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH LALAEHTGFTVAYAAASFSTAALIAFYLGSATRSRRNGLALFSVLAVAYGVMYLVLNEDE HHHHHCCCCEEEEEHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCEEEEEECCCC YALLAGAVISFIAIAATMFATRKVDWSGAGTAANSEFSSRT HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRGNFAASLRSPGAKFLMIGFISLVLLVPLLLVWGLTEERASRAREVSARIANGWGGDQ CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC VVNGPYLAVPFDVERRREVDGRTIVDRTTEWALVMPETLQVTADLKTEEKKLSIYSLPVY EECCCEEEEECCHHHHHCCCCCEEEECCCCEEEECCCEEEEEECCCCCCCEEEEEEECCC NGALVLKGRFGQGVLQDLARFAGTPRLDNAILVLSIGDITGIRSSAGVRINGGAVLPFDP CCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCEEECCCC GMRDMSVIASRALENNSIRSDAGVHRQIDRNLIESGFDFDIAFSLNGSGSFAVAPAGQTT CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCC SFTAKADWPHPGFEGLFLPEVKTVTAADFNASWTIPYLARGIDRVVEGPRLPLSNSLMTI EEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEE NLVEPVKFYQVIARTLKYSIGFISLVFLAVFIVELKGGSVVHWIQYVLTGLALIVFYVLL EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH LALAEHTGFTVAYAAASFSTAALIAFYLGSATRSRRNGLALFSVLAVAYGVMYLVLNEDE HHHHHCCCCEEEEEHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCEEEEEECCCC YALLAGAVISFIAIAATMFATRKVDWSGAGTAANSEFSSRT HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2835585; 3531171; 7610040; 9278503; 2984198 [H]