Click here to switch to the map view.

The map label for this gene is ligE [H]

Identifier: 159184623

GI number: 159184623

Start: 1112597

End: 1113292

Strand: Direct

Name: ligE [H]

Synonym: Atu1121

Alternate gene names: 159184623

Gene position: 1112597-1113292 (Clockwise)

Preceding gene: 15888456

Following gene: 15888460

Centisome position: 39.15

GC content: 59.77

Gene sequence:

>696_bases
ATGACGAATTCCAGAACGCTCTACTCGTTGTGCGGAAGCGATATTTCCAGACCGTTTTCTCCCCATTGCTGGAAAACCGT
GCTTTCGCTGGCCCATAAGGGGCTGGATTTCGAGGAGCGCCCCTTGCCCTTCACGGTCATTCCGACGGTGGAGGACGGGT
TTTCGAAGACCGTGCCGATCCTGCGCGATGGTGACCAACTGGTGAGCGACAGTTTCGAAATCGCGCTTTATCTTGATGAG
GCTTACCCGGAGCGGCCGTCGCTATTTGACGGGGACGGTGGCAGGTCGATGGCCCGCTTCGTCGAAAGCTGGTCGCAGAC
GGTGCTCCACCCGGTCATCACCCGTATTGCCGTGCTCGATATCCACAATATGCTCAACGAGCCGGACCGCGTTTATTTCC
GCGACAGCAGGACAAAGGCGCTGGGCCGGCCGCTGGAGGATGTCGTGGCCAACCGTGAGGCGGAAATCGCTGCCTTCCCC
GCATTGTTGGCGCCGATCCGCCGCATGTTGAGCTTCCAGCCTTTCATTGGCGGCGCGTCGCCGCTGTTTGCTGACTATAT
CGTCTTCGGCGCGCTGCAATGGGCGCGCATCACCTCAGGGGCGGATTTGTTTGCGGATAACGATCCGGTACGAGACTGGT
TCGAAGGCTGCCTAGATCTCTACGACGCAAGGGGCCGCAGTGTGACAGCGGCGTGA

Upstream 100 bases:

>100_bases
CGCACGCGTTTCCTGATCGATCACATGACAAATCCTGATTTGATTTCATGGCCCGGCCGTTCTTATATCGTTTCATCAAT
ATTGCAGAAGAGGGTAGCTT

Downstream 100 bases:

>100_bases
AATGTCTGCCGTCATCGTCGCAATCTCGTTGATCCCCCTTGTTTTCGGGCCTTTGGGCGGGTAAAGACCGCCCACTTTCT
CTGAAAAAGGAACAGACACA

Product: lignin degradation protein

Products: NA

Alternate protein names: Beta-aryl ether cleaving enzyme [H]

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTNSRTLYSLCGSDISRPFSPHCWKTVLSLAHKGLDFEERPLPFTVIPTVEDGFSKTVPILRDGDQLVSDSFEIALYLDE
AYPERPSLFDGDGGRSMARFVESWSQTVLHPVITRIAVLDIHNMLNEPDRVYFRDSRTKALGRPLEDVVANREAEIAAFP
ALLAPIRRMLSFQPFIGGASPLFADYIVFGALQWARITSGADLFADNDPVRDWFEGCLDLYDARGRSVTAA

Sequences:

>Translated_231_residues
MTNSRTLYSLCGSDISRPFSPHCWKTVLSLAHKGLDFEERPLPFTVIPTVEDGFSKTVPILRDGDQLVSDSFEIALYLDE
AYPERPSLFDGDGGRSMARFVESWSQTVLHPVITRIAVLDIHNMLNEPDRVYFRDSRTKALGRPLEDVVANREAEIAAFP
ALLAPIRRMLSFQPFIGGASPLFADYIVFGALQWARITSGADLFADNDPVRDWFEGCLDLYDARGRSVTAA
>Mature_230_residues
TNSRTLYSLCGSDISRPFSPHCWKTVLSLAHKGLDFEERPLPFTVIPTVEDGFSKTVPILRDGDQLVSDSFEIALYLDEA
YPERPSLFDGDGGRSMARFVESWSQTVLHPVITRIAVLDIHNMLNEPDRVYFRDSRTKALGRPLEDVVANREAEIAAFPA
LLAPIRRMLSFQPFIGGASPLFADYIVFGALQWARITSGADLFADNDPVRDWFEGCLDLYDARGRSVTAA

Specific function: Able to degrade various dimeric lignin compounds. Catalyzes the unique and reductive cleavage of arylglycerol-beta- aryl ether [H]

COG id: COG0625

COG function: function code O; Glutathione S-transferase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GST N-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010987
- InterPro:   IPR004045
- InterPro:   IPR004046
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]

EC number: NA

Molecular weight: Translated: 25833; Mature: 25701

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSRTLYSLCGSDISRPFSPHCWKTVLSLAHKGLDFEERPLPFTVIPTVEDGFSKTVPI
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHCCCC
LRDGDQLVSDSFEIALYLDEAYPERPSLFDGDGGRSMARFVESWSQTVLHPVITRIAVLD
CCCCHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IHNMLNEPDRVYFRDSRTKALGRPLEDVVANREAEIAAFPALLAPIRRMLSFQPFIGGAS
HHHHHCCCCEEEEECCHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PLFADYIVFGALQWARITSGADLFADNDPVRDWFEGCLDLYDARGRSVTAA
HHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHCCCCEECCC
>Mature Secondary Structure 
TNSRTLYSLCGSDISRPFSPHCWKTVLSLAHKGLDFEERPLPFTVIPTVEDGFSKTVPI
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHCCCC
LRDGDQLVSDSFEIALYLDEAYPERPSLFDGDGGRSMARFVESWSQTVLHPVITRIAVLD
CCCCHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IHNMLNEPDRVYFRDSRTKALGRPLEDVVANREAEIAAFPALLAPIRRMLSFQPFIGGAS
HHHHHCCCCEEEEECCHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PLFADYIVFGALQWARITSGADLFADNDPVRDWFEGCLDLYDARGRSVTAA
HHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1744051; 8495726 [H]