Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889927
Identifier: 15889927
GI number: 15889927
Start: 2655238
End: 2656119
Strand: Reverse
Name: 15889927
Synonym: Atu2671
Alternate gene names: NA
Gene position: 2656119-2655238 (Counterclockwise)
Preceding gene: 159185319
Following gene: 15889926
Centisome position: 93.47
GC content: 60.09
Gene sequence:
>882_bases GTGAGCCAAATCGCCTTCTGGGGTGCCGTGGAGCTGGGACTGGTCTTCGCTTTCGTGGCGATCGGCGTTTATCTCGCTTT CCGCGTACTTGATTTTCCTGACCTGACCGTGGACGGTTCGTTTCCGCTTGGCGCCGCCGTTGCTGCCGTGCTGATTATCG CCGGTCTGAATGCCTGGGTCGCGACAGCGATTGCCATGGTCGCTGGCGCTGCCGCGGGCATGGTGACCGCAACACTCAAC GTTCGTTTCAAGATCCTCAACCTGCTTGCCTCGATCCTGACGATGATCGCGCTGTTTTCCGTCAATCTCAGGGTGATGGG AAAGCCGAATGTGGCGCTGCTCAATCAGGACACGATGGTATCGCCGTTTTACGGCCTTGGCCTTTCCGAATATCTGGTGC GGCCGCTCTTCGTCGGTGTGCTGGTGCTGATCGCTGTCATTCTCGTCTGGCGTTTTCTTGAAAGCGATGCGGGTCTCGCC ATGCGGGCGACCGGCGCCAATGCGCGGATGGCGCGGGCGCAGGGTGTGAAGACCGGAAACCAGATCTATCTCGGCATGGC GCTTTCCAATGCGCTGGTGGCTCTCGGCGGCGCATTGTTTGCGCAGACCAATGGTTTTGCGGATGTGACCTCCGGTGTCG GTACCATCGTCGTCGGGCTTGCGGCCGTCATCATCGGTGAGACGCTGTTTGGCGCACGCGGCATCCTGATCGCGCTCATC GGCTGTGTCTTCGGCTCCATTGCCTATCGTCTCGCCATCCAGCTTGCCCTGTCGAGCGATGTGCTAGGTCTCAAGGCGTC CGATCTCAATTTCGTAACGGCGGTATTGGTGGCCATCGCATTGATCCTGCCGCGACTGCGCCGTGGGGGAGCAACATCGT GA
Upstream 100 bases:
>100_bases ACCAGACTGAATTGCGGGCGGCGGCATTCCGCCGCCCGTTTTACGTGGCACGAGACGGTGCCCGTATCCGCCTGATGGCG GCAATAACAAGGACATTACC
Downstream 100 bases:
>100_bases TTTCGCTTTCCGACATTCAGGTCGTCTTCGGGCGCGGCACGCCGCTGCAAAAGCAGGCGCTCGCCAAGATCGATCTCACC ATCGAGGATGGTTCCTTCGT
Product: ABC transporter, membrane spanning protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MSQIAFWGAVELGLVFAFVAIGVYLAFRVLDFPDLTVDGSFPLGAAVAAVLIIAGLNAWVATAIAMVAGAAAGMVTATLN VRFKILNLLASILTMIALFSVNLRVMGKPNVALLNQDTMVSPFYGLGLSEYLVRPLFVGVLVLIAVILVWRFLESDAGLA MRATGANARMARAQGVKTGNQIYLGMALSNALVALGGALFAQTNGFADVTSGVGTIVVGLAAVIIGETLFGARGILIALI GCVFGSIAYRLAIQLALSSDVLGLKASDLNFVTAVLVAIALILPRLRRGGATS
Sequences:
>Translated_293_residues MSQIAFWGAVELGLVFAFVAIGVYLAFRVLDFPDLTVDGSFPLGAAVAAVLIIAGLNAWVATAIAMVAGAAAGMVTATLN VRFKILNLLASILTMIALFSVNLRVMGKPNVALLNQDTMVSPFYGLGLSEYLVRPLFVGVLVLIAVILVWRFLESDAGLA MRATGANARMARAQGVKTGNQIYLGMALSNALVALGGALFAQTNGFADVTSGVGTIVVGLAAVIIGETLFGARGILIALI GCVFGSIAYRLAIQLALSSDVLGLKASDLNFVTAVLVAIALILPRLRRGGATS >Mature_292_residues SQIAFWGAVELGLVFAFVAIGVYLAFRVLDFPDLTVDGSFPLGAAVAAVLIIAGLNAWVATAIAMVAGAAAGMVTATLNV RFKILNLLASILTMIALFSVNLRVMGKPNVALLNQDTMVSPFYGLGLSEYLVRPLFVGVLVLIAVILVWRFLESDAGLAM RATGANARMARAQGVKTGNQIYLGMALSNALVALGGALFAQTNGFADVTSGVGTIVVGLAAVIIGETLFGARGILIALIG CVFGSIAYRLAIQLALSSDVLGLKASDLNFVTAVLVAIALILPRLRRGGATS
Specific function: Unknown
COG id: COG4120
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 30273; Mature: 30141
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQIAFWGAVELGLVFAFVAIGVYLAFRVLDFPDLTVDGSFPLGAAVAAVLIIAGLNAWV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHH ATAIAMVAGAAAGMVTATLNVRFKILNLLASILTMIALFSVNLRVMGKPNVALLNQDTMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCC SPFYGLGLSEYLVRPLFVGVLVLIAVILVWRFLESDAGLAMRATGANARMARAQGVKTGN CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCC QIYLGMALSNALVALGGALFAQTNGFADVTSGVGTIVVGLAAVIIGETLFGARGILIALI EEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GCVFGSIAYRLAIQLALSSDVLGLKASDLNFVTAVLVAIALILPRLRRGGATS HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SQIAFWGAVELGLVFAFVAIGVYLAFRVLDFPDLTVDGSFPLGAAVAAVLIIAGLNAWV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHH ATAIAMVAGAAAGMVTATLNVRFKILNLLASILTMIALFSVNLRVMGKPNVALLNQDTMV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCC SPFYGLGLSEYLVRPLFVGVLVLIAVILVWRFLESDAGLAMRATGANARMARAQGVKTGN CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCC QIYLGMALSNALVALGGALFAQTNGFADVTSGVGTIVVGLAAVIIGETLFGARGILIALI EEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GCVFGSIAYRLAIQLALSSDVLGLKASDLNFVTAVLVAIALILPRLRRGGATS HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]