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The map label for this gene is yvoA [H]

Identifier: 15889862

GI number: 15889862

Start: 2584907

End: 2585659

Strand: Direct

Name: yvoA [H]

Synonym: Atu2606

Alternate gene names: 15889862

Gene position: 2584907-2585659 (Clockwise)

Preceding gene: 159185288

Following gene: 15889863

Centisome position: 90.97

GC content: 62.15

Gene sequence:

>753_bases
ATGAACGGGGCAGCGCTTAATCTGGAGGACCTGCAATCAGGCGGCGGTCCGCTGTACCTGAAATTGCGCCAGACGATCGA
AGACGCCATCAATGGCGGCCGCCTGAAGCATGGCGACGCCCTGCCGCCGGAACGCGACATTGCTGAAAGCGCCTGCGTCA
GCCGCGTCACGGTGCGCAAGGCGGTGGATGATCTCGTCCGCGACGGCCTTCTCGTTCGCCGGCATGGTTCGGGCACCTTT
GTCGTCAAGCCCATCACCCGCATGCAACAGCCGCTGACCAAGCTCACCTCCTTTACCGAGGACATGCGCCGGCGCGGCAT
GACGGCAAGCACCCAATGGCTGGACAGGGGTCTTTTCCACCCCACCGGCGATGAGATGATGACACTCGGCCTTTCCCAGT
CCGCCATGGTGGCACGGCTCACGCGCCTGCGTCTTGCCAATGACCAGCCGATCGCGCTGGAAGTCACCAGCCTGCCGGGG
GATATTTTGCCCGATCCGCAACTCGTCGAAAATTCGCTTTATCTGGAGCTTGAAAAGAGCGGCATTCGCCCCGTGCGCGC
CATTCAGCGCATCTCGGCCCGCAATCTCACGGATGAGGAAACCCTTCTGCTTGGGGTCCCGCCGGGCTCGGCAGCGCTTT
CCGTTCAGCGCATGGCCTATCTCGAAAGCGGGCGCCTCATGGAAATATCCCTCGCGCTTTACCGCAGTGATGCCTACGAC
CTTGTCGCCGAACTGACGATGGGTCCAGAGTAA

Upstream 100 bases:

>100_bases
AATCATACAAGTTCGCTAATGGTCCTATTTTGGTATTGCCGATCGCGTCTTCTGTGGTATAGCCAGAAGCAGCCATATCG
GATTGTGACAGAGGTTATGG

Downstream 100 bases:

>100_bases
AACATTGATCAAGGACATGAAACGATGACAACCCTGATGCGCCAGGAAATCGATGAGATTCCCGATGCTGTCGCCCGCCT
GCTGGACAATGCCAAGACCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNGAALNLEDLQSGGGPLYLKLRQTIEDAINGGRLKHGDALPPERDIAESACVSRVTVRKAVDDLVRDGLLVRRHGSGTF
VVKPITRMQQPLTKLTSFTEDMRRRGMTASTQWLDRGLFHPTGDEMMTLGLSQSAMVARLTRLRLANDQPIALEVTSLPG
DILPDPQLVENSLYLELEKSGIRPVRAIQRISARNLTDEETLLLGVPPGSAALSVQRMAYLESGRLMEISLALYRSDAYD
LVAELTMGPE

Sequences:

>Translated_250_residues
MNGAALNLEDLQSGGGPLYLKLRQTIEDAINGGRLKHGDALPPERDIAESACVSRVTVRKAVDDLVRDGLLVRRHGSGTF
VVKPITRMQQPLTKLTSFTEDMRRRGMTASTQWLDRGLFHPTGDEMMTLGLSQSAMVARLTRLRLANDQPIALEVTSLPG
DILPDPQLVENSLYLELEKSGIRPVRAIQRISARNLTDEETLLLGVPPGSAALSVQRMAYLESGRLMEISLALYRSDAYD
LVAELTMGPE
>Mature_250_residues
MNGAALNLEDLQSGGGPLYLKLRQTIEDAINGGRLKHGDALPPERDIAESACVSRVTVRKAVDDLVRDGLLVRRHGSGTF
VVKPITRMQQPLTKLTSFTEDMRRRGMTASTQWLDRGLFHPTGDEMMTLGLSQSAMVARLTRLRLANDQPIALEVTSLPG
DILPDPQLVENSLYLELEKSGIRPVRAIQRISARNLTDEETLLLGVPPGSAALSVQRMAYLESGRLMEISLALYRSDAYD
LVAELTMGPE

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=241, Percent_Identity=28.6307053941909, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786950, Length=234, Percent_Identity=32.4786324786325, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790118, Length=251, Percent_Identity=26.6932270916335, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082252, Length=226, Percent_Identity=25.6637168141593, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790540, Length=213, Percent_Identity=29.5774647887324, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27462; Mature: 27462

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGAALNLEDLQSGGGPLYLKLRQTIEDAINGGRLKHGDALPPERDIAESACVSRVTVRK
CCCCCCCHHHHHCCCCEEEEHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHH
AVDDLVRDGLLVRRHGSGTFVVKPITRMQQPLTKLTSFTEDMRRRGMTASTQWLDRGLFH
HHHHHHHCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
PTGDEMMTLGLSQSAMVARLTRLRLANDQPIALEVTSLPGDILPDPQLVENSLYLELEKS
CCCCHHEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCEEEEEECC
GIRPVRAIQRISARNLTDEETLLLGVPPGSAALSVQRMAYLESGRLMEISLALYRSDAYD
CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEHEEHHCCHHH
LVAELTMGPE
HHHHHHCCCC
>Mature Secondary Structure
MNGAALNLEDLQSGGGPLYLKLRQTIEDAINGGRLKHGDALPPERDIAESACVSRVTVRK
CCCCCCCHHHHHCCCCEEEEHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHH
AVDDLVRDGLLVRRHGSGTFVVKPITRMQQPLTKLTSFTEDMRRRGMTASTQWLDRGLFH
HHHHHHHCCEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
PTGDEMMTLGLSQSAMVARLTRLRLANDQPIALEVTSLPGDILPDPQLVENSLYLELEKS
CCCCHHEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCEEEEEECC
GIRPVRAIQRISARNLTDEETLLLGVPPGSAALSVQRMAYLESGRLMEISLALYRSDAYD
CCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEHEEHHCCHHH
LVAELTMGPE
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]