Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15889715
Identifier: 15889715
GI number: 15889715
Start: 2414180
End: 2415004
Strand: Direct
Name: 15889715
Synonym: Atu2444
Alternate gene names: NA
Gene position: 2414180-2415004 (Clockwise)
Preceding gene: 15889714
Following gene: 15889716
Centisome position: 84.96
GC content: 59.27
Gene sequence:
>825_bases ATGAATATCGAAGACCGCCGGTTTATATTCCAGGAGCTGCGCAGCGTCGAAGGTTATATCGACCCGCCCGATGCGCTTGT GTTCAAGGCGCTGCTGCAGGCGCAGACAAGAGATGGCCTCGGCGGCGGCATGGCGGAAATCGGCGTTTATTATGGCCGCT CCTATTTCCTGCTGCGCAAATTTGCCCAGCCGCAGGAAAAGGTGCTGGGTGTCGATCTTTTCGATCTTGATCCGCCCGAG GATGGCAGTCTCGACCAATATGAGCGCCTGATGGAAAACGGCCGCCGGCTGGGGTTTCCGATGGATGTGGACCTCATCAT CAAGGGCGACAGCACACGGCTGGCTCCCGCCGAGATCACCTCACGTATCGGCCCGGCGCGCTTCTTCAGCATCGATGGCG GCCACCATCTGCATCATGTGCTGGCGGATGCGAAGCTGGCGATGGAGGTGATCGCGCCGCACGGCGTCATCGTCTTCGAC GATACCTTCAATCCCGCCTGGCCGGAGGTGACGGTGGGTGTGGCCGATTTTCTGCGCACCCACGGCCACAGCCTCGTCTG TTTCGGCATGACGAAATATAAGACCTATGTCTGCCGCCGTGAATTTTACGCTACCTACGCAGCCGCGATCACCGCCGATC CCGACTTGCAGGCGCTCGGCCATGTCGAGACGCAGTTCCTCGGCTCCAAGGTGGTTCGCCTGCACAATCCCATGCGCCGG CGGGTGATGTATGAGCTGATGGTGCGCTCCGGTCTCGGTGGATTTTCGGAACGAATCTACCGTTCGAAAGTTAAACAGGT CAGAGACAGTGTCGCCGGAACATAA
Upstream 100 bases:
>100_bases GTCGCAGGCCGAGCTTGCCGAATAATCGACGCCGCAAGCAACCCGTCCGTTCAATGCCTCAGCCTGAACGGACCCGGCAT GATGACGGGATTTATCGCAT
Downstream 100 bases:
>100_bases CGCATGTGTGAACGCAGCGTTCGCTTGAAACGCGGCGGGCGCGTACATATCTGTCACATGGGTTCGTGCGGGGTCGGTAA CGACCCGCAGCTTACGGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MNIEDRRFIFQELRSVEGYIDPPDALVFKALLQAQTRDGLGGGMAEIGVYYGRSYFLLRKFAQPQEKVLGVDLFDLDPPE DGSLDQYERLMENGRRLGFPMDVDLIIKGDSTRLAPAEITSRIGPARFFSIDGGHHLHHVLADAKLAMEVIAPHGVIVFD DTFNPAWPEVTVGVADFLRTHGHSLVCFGMTKYKTYVCRREFYATYAAAITADPDLQALGHVETQFLGSKVVRLHNPMRR RVMYELMVRSGLGGFSERIYRSKVKQVRDSVAGT
Sequences:
>Translated_274_residues MNIEDRRFIFQELRSVEGYIDPPDALVFKALLQAQTRDGLGGGMAEIGVYYGRSYFLLRKFAQPQEKVLGVDLFDLDPPE DGSLDQYERLMENGRRLGFPMDVDLIIKGDSTRLAPAEITSRIGPARFFSIDGGHHLHHVLADAKLAMEVIAPHGVIVFD DTFNPAWPEVTVGVADFLRTHGHSLVCFGMTKYKTYVCRREFYATYAAAITADPDLQALGHVETQFLGSKVVRLHNPMRR RVMYELMVRSGLGGFSERIYRSKVKQVRDSVAGT >Mature_274_residues MNIEDRRFIFQELRSVEGYIDPPDALVFKALLQAQTRDGLGGGMAEIGVYYGRSYFLLRKFAQPQEKVLGVDLFDLDPPE DGSLDQYERLMENGRRLGFPMDVDLIIKGDSTRLAPAEITSRIGPARFFSIDGGHHLHHVLADAKLAMEVIAPHGVIVFD DTFNPAWPEVTVGVADFLRTHGHSLVCFGMTKYKTYVCRREFYATYAAAITADPDLQALGHVETQFLGSKVVRLHNPMRR RVMYELMVRSGLGGFSERIYRSKVKQVRDSVAGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30831; Mature: 30831
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIEDRRFIFQELRSVEGYIDPPDALVFKALLQAQTRDGLGGGMAEIGVYYGRSYFLLRK CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHH FAQPQEKVLGVDLFDLDPPEDGSLDQYERLMENGRRLGFPMDVDLIIKGDSTRLAPAEIT HCCHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHH SRIGPARFFSIDGGHHLHHVLADAKLAMEVIAPHGVIVFDDTFNPAWPEVTVGVADFLRT HCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH HGHSLVCFGMTKYKTYVCRREFYATYAAAITADPDLQALGHVETQFLGSKVVRLHNPMRR CCCEEEEEEHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH RVMYELMVRSGLGGFSERIYRSKVKQVRDSVAGT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNIEDRRFIFQELRSVEGYIDPPDALVFKALLQAQTRDGLGGGMAEIGVYYGRSYFLLRK CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHH FAQPQEKVLGVDLFDLDPPEDGSLDQYERLMENGRRLGFPMDVDLIIKGDSTRLAPAEIT HCCHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHH SRIGPARFFSIDGGHHLHHVLADAKLAMEVIAPHGVIVFDDTFNPAWPEVTVGVADFLRT HCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH HGHSLVCFGMTKYKTYVCRREFYATYAAAITADPDLQALGHVETQFLGSKVVRLHNPMRR CCCEEEEEEHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH RVMYELMVRSGLGGFSERIYRSKVKQVRDSVAGT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA