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The map label for this gene is fnrN [H]

Identifier: 15888914

GI number: 15888914

Start: 1583538

End: 1584263

Strand: Direct

Name: fnrN [H]

Synonym: Atu1602

Alternate gene names: 15888914

Gene position: 1583538-1584263 (Clockwise)

Preceding gene: 159184831

Following gene: 159184834

Centisome position: 55.73

GC content: 58.54

Gene sequence:

>726_bases
ATGGACACGCTGCAGAAGACCATCCACAATTCGGAATACCCCGTCGTATGCCGCTCCTGCGAGGCGCGTCACGGCGGTCT
CTGCAGCACGTTGACGCCGCAGCAGCTCTGCGACCTGAACCGTCACTCCAGCCGCAAAAAACTGGAAGCCGGCAATGAGC
TGCTTGGCCAGGGGGAGCTCGTCACCTCCTATGGCAACATCCTCAATGGCGTGGTGAAGCTTTCGAAAATGATGTCGGAC
GGTCGCCAGCAGATCGTCGGCCTGCAATTTGCCCCGGATTTTCTTGGCCGCCCGTTTATGGCGGAAAGCAAGATGACGGC
GGAAGCTGCGACCGATGTGGAGATCTGCCTTTTTCCGCGCCGTATCGTCGACCGTATGGTCACCGAAGTGCCTGACATGG
AACGCAAGCTGCACAGCCAGTCCCTGAAGGAACTGGACGAGGCGCGCGACTGGATGCTGACGCTGGGGCGCAAATCGGCG
CAGGAAAAGGTTGCCAGCTTCCTTTATATGATCGCCACCCATATCGACCCGGAAAATGACGACAAGTCATGCTTCGATCT
GCCGCTTTCACGCGCCGATATCGCTGACTTCCTCGGCCTCACCATCGAGACCGTTAGCCGGCAAATGACTAAGCTGCGCA
AGGAAGGCACCATCCGCATCGAGAACAACCGCCATATCACGGTGCCGGATCTCGACGTTCTCAGCGAAGCCGCTGGTAAC
GACTGA

Upstream 100 bases:

>100_bases
GACGCGGGGACGACGGCTACATGGCTCACGCCCTTAAAGAGACCGGATTTGATATCCACGGTCGCATTTCGTCCCTAAAA
GCCAGCATTGGAAAAGGCTT

Downstream 100 bases:

>100_bases
GGAAATTAGCCCTTTCACCGCCCCTGAAGTGCGGATGCCCCGAAATTGATGTGTGGCGCCCGCGCCTGAGCGGGTGCGAG
CGCAAAACCGGCAAGAACCA

Product: Crp family transcriptional regulator

Products: NA

Alternate protein names: ORF-240 [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MDTLQKTIHNSEYPVVCRSCEARHGGLCSTLTPQQLCDLNRHSSRKKLEAGNELLGQGELVTSYGNILNGVVKLSKMMSD
GRQQIVGLQFAPDFLGRPFMAESKMTAEAATDVEICLFPRRIVDRMVTEVPDMERKLHSQSLKELDEARDWMLTLGRKSA
QEKVASFLYMIATHIDPENDDKSCFDLPLSRADIADFLGLTIETVSRQMTKLRKEGTIRIENNRHITVPDLDVLSEAAGN
D

Sequences:

>Translated_241_residues
MDTLQKTIHNSEYPVVCRSCEARHGGLCSTLTPQQLCDLNRHSSRKKLEAGNELLGQGELVTSYGNILNGVVKLSKMMSD
GRQQIVGLQFAPDFLGRPFMAESKMTAEAATDVEICLFPRRIVDRMVTEVPDMERKLHSQSLKELDEARDWMLTLGRKSA
QEKVASFLYMIATHIDPENDDKSCFDLPLSRADIADFLGLTIETVSRQMTKLRKEGTIRIENNRHITVPDLDVLSEAAGN
D
>Mature_241_residues
MDTLQKTIHNSEYPVVCRSCEARHGGLCSTLTPQQLCDLNRHSSRKKLEAGNELLGQGELVTSYGNILNGVVKLSKMMSD
GRQQIVGLQFAPDFLGRPFMAESKMTAEAATDVEICLFPRRIVDRMVTEVPDMERKLHSQSLKELDEARDWMLTLGRKSA
QEKVASFLYMIATHIDPENDDKSCFDLPLSRADIADFLGLTIETVSRQMTKLRKEGTIRIENNRHITVPDLDVLSEAAGN
D

Specific function: Promotes the microaerobic and symbiotic induction of fixN, possibly by binding to the FNR consensus binding site upstream of fixN [H]

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787595, Length=238, Percent_Identity=25.6302521008403, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 27040; Mature: 27040

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50042 CNMP_BINDING_3 ; PS00042 HTH_CRP_1 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQKTIHNSEYPVVCRSCEARHGGLCSTLTPQQLCDLNRHSSRKKLEAGNELLGQGEL
CCHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCHH
VTSYGNILNGVVKLSKMMSDGRQQIVGLQFAPDFLGRPFMAESKMTAEAATDVEICLFPR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHCCCCCCCCHHHHHHHCCHHHEECCH
RIVDRMVTEVPDMERKLHSQSLKELDEARDWMLTLGRKSAQEKVASFLYMIATHIDPEND
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
DKSCFDLPLSRADIADFLGLTIETVSRQMTKLRKEGTIRIENNRHITVPDLDVLSEAAGN
CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCHHHHHHHCCC
D
C
>Mature Secondary Structure
MDTLQKTIHNSEYPVVCRSCEARHGGLCSTLTPQQLCDLNRHSSRKKLEAGNELLGQGEL
CCHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCHH
VTSYGNILNGVVKLSKMMSDGRQQIVGLQFAPDFLGRPFMAESKMTAEAATDVEICLFPR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHCCCCCCCCHHHHHHHCCHHHEECCH
RIVDRMVTEVPDMERKLHSQSLKELDEARDWMLTLGRKSAQEKVASFLYMIATHIDPEND
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC
DKSCFDLPLSRADIADFLGLTIETVSRQMTKLRKEGTIRIENNRHITVPDLDVLSEAAGN
CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCHHHHHHHCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2175385 [H]