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The map label for this gene is 15888362

Identifier: 15888362

GI number: 15888362

Start: 1012325

End: 1013434

Strand: Direct

Name: 15888362

Synonym: Atu1020

Alternate gene names: NA

Gene position: 1012325-1013434 (Clockwise)

Preceding gene: 159184578

Following gene: 15888364

Centisome position: 35.63

GC content: 58.38

Gene sequence:

>1110_bases
ATGAACATCAAGAGCCTTCTTATCGGCTCCGCTGCGGCTCTCGCAGCAGTATCCGGCGCTCACGCTGCCGACGCTATCGT
CGCTGCTGAGCCTGAGCCCCTGGAATACGTTCGCGTTTGCGACGCTTTCGGCACTGGCTTCTTCTACATCCCCGGCACCG
AAACCTGCCTGAAGTTCGGCGGTTACGTTCGTTTCCAGACCGACTTCGGTCGTGACAAGTCTGGCGTTTCTGACTGGGAC
TCGTTCACCCGCGCTCAGTTCGAAGTTGACACCCGCACCGACACCGAGCTCGGCGCTCTGCGTGGCTTCATCGGTCTGCG
TGGCAATGCTGACAACGGCTCGTCCTCGTCTTCGAGCGTTTTTGTTGACCAGGCCTTCATCGAACTCGGCGGCCTGAAGG
TCGGTAAGTTCTACAGCTGGTGGGACGATGGCCTCTCTGGCGAGTCTGACGTTCTTTCCACGAACGCTCTGTTCAACTCG
ATCCGTTACACCTATGACGCTGGTTCCTTCTGGGCAGGCGTTTCGGTTGATGAACTCGAAGGCACGGGCAGCCAGTTCGC
AACCATCACCGGTCCGGCAAATGGTCTTGGCCTCTTCCCGCTTTCGCAGGAACTTGACAACAACGTTGGTATCGCTCTCG
GCCTCGGCGCCAAGCTCGGCGCTGCTTCCCTGCAGCTCATCGGCGGCTACGACATCGACCAGGAAGAAGGCGCAATCCGC
CTGATCGCAACGGCCGACCTCGGTCCGGGCACTCTCGGTCTTGCTGGTGTTTGGGCTTCCGGCGCAAACGCTTACTACGC
TGAATCCGAGTGGGCAGTTGCTGCTGAATACGCAATCAAGGCAACTGACAAGCTGACGATCACCCCCGGTGGTCAGTACT
TCGGCAACGTTGCTGACCGCATTGCTCTGACCAACGCTGCTGGCGTTCCGACTGGTGCGTCTGCAATCATCACCAACGAC
TGGTCTAACCGTGACGCATGGCAGGCTGGCGTAACGATCGACTACAAGATCACTTCTGGTCTCTCCACGAAGGTCGCAGT
TAACTACTACGACGAAGACAATCGTGATGAGCAGTGGAAGGGCTTCGTTCGCCTTCAGCGCTCGTTCTAA

Upstream 100 bases:

>100_bases
TGGATCGTTTGGCTTCTAAGAACACGGGAATGGGGCAGGGAATGCTGTCCTTCAGCGAAAGTACCCAGACCCACTTAAAA
ACTTTGACTGGAGGTCAACC

Downstream 100 bases:

>100_bases
TCTGATCTGACATCGTCAGTGATGGAAGCCCCGGCAGAAATGCCGGGGTTTTTCTATTTCTGACAATCGCGCAATAACTC
GAATCTCGCATCAAAAAAGC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MNIKSLLIGSAAALAAVSGAHAADAIVAAEPEPLEYVRVCDAFGTGFFYIPGTETCLKFGGYVRFQTDFGRDKSGVSDWD
SFTRAQFEVDTRTDTELGALRGFIGLRGNADNGSSSSSSVFVDQAFIELGGLKVGKFYSWWDDGLSGESDVLSTNALFNS
IRYTYDAGSFWAGVSVDELEGTGSQFATITGPANGLGLFPLSQELDNNVGIALGLGAKLGAASLQLIGGYDIDQEEGAIR
LIATADLGPGTLGLAGVWASGANAYYAESEWAVAAEYAIKATDKLTITPGGQYFGNVADRIALTNAAGVPTGASAIITND
WSNRDAWQAGVTIDYKITSGLSTKVAVNYYDEDNRDEQWKGFVRLQRSF

Sequences:

>Translated_369_residues
MNIKSLLIGSAAALAAVSGAHAADAIVAAEPEPLEYVRVCDAFGTGFFYIPGTETCLKFGGYVRFQTDFGRDKSGVSDWD
SFTRAQFEVDTRTDTELGALRGFIGLRGNADNGSSSSSSVFVDQAFIELGGLKVGKFYSWWDDGLSGESDVLSTNALFNS
IRYTYDAGSFWAGVSVDELEGTGSQFATITGPANGLGLFPLSQELDNNVGIALGLGAKLGAASLQLIGGYDIDQEEGAIR
LIATADLGPGTLGLAGVWASGANAYYAESEWAVAAEYAIKATDKLTITPGGQYFGNVADRIALTNAAGVPTGASAIITND
WSNRDAWQAGVTIDYKITSGLSTKVAVNYYDEDNRDEQWKGFVRLQRSF
>Mature_369_residues
MNIKSLLIGSAAALAAVSGAHAADAIVAAEPEPLEYVRVCDAFGTGFFYIPGTETCLKFGGYVRFQTDFGRDKSGVSDWD
SFTRAQFEVDTRTDTELGALRGFIGLRGNADNGSSSSSSVFVDQAFIELGGLKVGKFYSWWDDGLSGESDVLSTNALFNS
IRYTYDAGSFWAGVSVDELEGTGSQFATITGPANGLGLFPLSQELDNNVGIALGLGAKLGAASLQLIGGYDIDQEEGAIR
LIATADLGPGTLGLAGVWASGANAYYAESEWAVAAEYAIKATDKLTITPGGQYFGNVADRIALTNAAGVPTGASAIITND
WSNRDAWQAGVTIDYKITSGLSTKVAVNYYDEDNRDEQWKGFVRLQRSF

Specific function: May act as an outer membrane pore [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 39044; Mature: 39044

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKSLLIGSAAALAAVSGAHAADAIVAAEPEPLEYVRVCDAFGTGFFYIPGTETCLKFG
CCHHHHHHCCHHHHHHHCCCCHHCEEEECCCCCHHHHHHHHHHCCCEEEECCCHHHHHHC
GYVRFQTDFGRDKSGVSDWDSFTRAQFEVDTRTDTELGALRGFIGLRGNADNGSSSSSSV
CEEEEEECCCCCCCCCCHHHHHCEEEEEECCCCCCHHHHHHHHEEECCCCCCCCCCCCEE
FVDQAFIELGGLKVGKFYSWWDDGLSGESDVLSTNALFNSIRYTYDAGSFWAGVSVDELE
EEEEHHHHHCCEEECCEEEECCCCCCCCCCEEEHHHHHHHEEEEECCCCEEECCCHHHCC
GTGSQFATITGPANGLGLFPLSQELDNNVGIALGLGAKLGAASLQLIGGYDIDQEEGAIR
CCCCEEEEEECCCCCEEECCCHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCEE
LIATADLGPGTLGLAGVWASGANAYYAESEWAVAAEYAIKATDKLTITPGGQYFGNVADR
EEEECCCCCCCEEEEEEEECCCCEEEECCCCEEEEEEEEEECCEEEECCCCHHHHHHHHH
IALTNAAGVPTGASAIITNDWSNRDAWQAGVTIDYKITSGLSTKVAVNYYDEDNRDEQWK
EEEECCCCCCCCCEEEEECCCCCCCCEECCCEEEEEECCCCCEEEEEEECCCCCCCHHHH
GFVRLQRSF
EEEEEEECC
>Mature Secondary Structure
MNIKSLLIGSAAALAAVSGAHAADAIVAAEPEPLEYVRVCDAFGTGFFYIPGTETCLKFG
CCHHHHHHCCHHHHHHHCCCCHHCEEEECCCCCHHHHHHHHHHCCCEEEECCCHHHHHHC
GYVRFQTDFGRDKSGVSDWDSFTRAQFEVDTRTDTELGALRGFIGLRGNADNGSSSSSSV
CEEEEEECCCCCCCCCCHHHHHCEEEEEECCCCCCHHHHHHHHEEECCCCCCCCCCCCEE
FVDQAFIELGGLKVGKFYSWWDDGLSGESDVLSTNALFNSIRYTYDAGSFWAGVSVDELE
EEEEHHHHHCCEEECCEEEECCCCCCCCCCEEEHHHHHHHEEEEECCCCEEECCCHHHCC
GTGSQFATITGPANGLGLFPLSQELDNNVGIALGLGAKLGAASLQLIGGYDIDQEEGAIR
CCCCEEEEEECCCCCEEECCCHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCEE
LIATADLGPGTLGLAGVWASGANAYYAESEWAVAAEYAIKATDKLTITPGGQYFGNVADR
EEEECCCCCCCEEEEEEEECCCCEEEECCCCEEEEEEEEEECCEEEECCCCHHHHHHHHH
IALTNAAGVPTGASAIITNDWSNRDAWQAGVTIDYKITSGLSTKVAVNYYDEDNRDEQWK
EEEECCCCCCCCCEEEEECCCCCCCCEECCCEEEEEECCCCCEEEEEEECCCCCCCHHHH
GFVRLQRSF
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]