Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is spr [C]
Identifier: 15888309
GI number: 15888309
Start: 953871
End: 954305
Strand: Direct
Name: spr [C]
Synonym: Atu0966
Alternate gene names: 15888309
Gene position: 953871-954305 (Clockwise)
Preceding gene: 15888308
Following gene: 15888310
Centisome position: 33.57
GC content: 66.44
Gene sequence:
>435_bases ATGAGCGATACGGCACAAAAAGTGCTGGCGATGGCCGAAAGCTGGATCGGCACGCCCTACAGGCACCAGGCCTCGTTGTC GGGTGTCGGCTGCGATTGCCTCGGCCTCATCCGCGGCATCTGGCGCGGCCTTTACGGGCACGAACCGGAATTGCCGCCGC CCTATGCGCCTGATTGGGCCGAACGCGGCGGAGAGGACCGGCTGATGGCGGCGGCGAAGCGCCATTTTCTGACGGTGCCG GGCATGGAAGAGGCGCAGCCCGGAGACCTGCTGCTGTTTCGCTGGCGCGCCGATGCGGCGGCGAAACATCTCGGCATCCT CGCCGGGCCGGAGCATTTCATCCATGCCTATGAGCAGGCCGCGGTGGTGCGGTCGGCGCTGGTGCCGGGCTGGAAACGGC GCATTGCCGGGACTTTTCGTTTTCCCGATCCCTGA
Upstream 100 bases:
>100_bases ATCACCTGAATTTTAGGGGCTTTCCGCATCTTCCGGGAGCGGATTTTGCCTATTCCTACGCAAGCGGCGGCCAGAGCCAC GACGGCGGAGTGCTGTTTCC
Downstream 100 bases:
>100_bases CATTTTTCGAGGCGAACATGGCGACAATCGTTTTTCAGGCGGCGGGCGCGGCGCTCGGCGGCATTTTTGGCCCCGTGGGC GCCATCATCGGCCGGGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NlpC/P60 Family Phage Cell Wall Peptidase; Phage Cell Wall Peptidase NlpC/P; Phage Cell Wall Peptidase Of NlpC/P60 Family; Spr-Family Cell Wall-Associated Hydrolase; Phage Cell Wall Peptidase; Cell Wall-Associated Hydrolase
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MSDTAQKVLAMAESWIGTPYRHQASLSGVGCDCLGLIRGIWRGLYGHEPELPPPYAPDWAERGGEDRLMAAAKRHFLTVP GMEEAQPGDLLLFRWRADAAAKHLGILAGPEHFIHAYEQAAVVRSALVPGWKRRIAGTFRFPDP
Sequences:
>Translated_144_residues MSDTAQKVLAMAESWIGTPYRHQASLSGVGCDCLGLIRGIWRGLYGHEPELPPPYAPDWAERGGEDRLMAAAKRHFLTVP GMEEAQPGDLLLFRWRADAAAKHLGILAGPEHFIHAYEQAAVVRSALVPGWKRRIAGTFRFPDP >Mature_143_residues SDTAQKVLAMAESWIGTPYRHQASLSGVGCDCLGLIRGIWRGLYGHEPELPPPYAPDWAERGGEDRLMAAAKRHFLTVPG MEEAQPGDLLLFRWRADAAAKHLGILAGPEHFIHAYEQAAVVRSALVPGWKRRIAGTFRFPDP
Specific function: Unknown
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Attached To The Membrane By A Lipid Anchor [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15899; Mature: 15768
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTAQKVLAMAESWIGTPYRHQASLSGVGCDCLGLIRGIWRGLYGHEPELPPPYAPDWA CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH ERGGEDRLMAAAKRHFLTVPGMEEAQPGDLLLFRWRADAAAKHLGILAGPEHFIHAYEQA HCCCCHHHHHHHHHHEEECCCCCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHH AVVRSALVPGWKRRIAGTFRFPDP HHHHHHHCCCHHHHHCCCCCCCCC >Mature Secondary Structure SDTAQKVLAMAESWIGTPYRHQASLSGVGCDCLGLIRGIWRGLYGHEPELPPPYAPDWA CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH ERGGEDRLMAAAKRHFLTVPGMEEAQPGDLLLFRWRADAAAKHLGILAGPEHFIHAYEQA HCCCCHHHHHHHHHHEEECCCCCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHH AVVRSALVPGWKRRIAGTFRFPDP HHHHHHHCCCHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA