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The map label for this gene is flgD [H]

Identifier: 15887924

GI number: 15887924

Start: 563639

End: 564112

Strand: Direct

Name: flgD [H]

Synonym: Atu0579

Alternate gene names: 15887924

Gene position: 563639-564112 (Clockwise)

Preceding gene: 15887923

Following gene: 15887925

Centisome position: 19.84

GC content: 60.34

Gene sequence:

>474_bases
ATGGCGGTAGATGCAGTCAACTCGGCAGCCGCTAACCCCTGGGCCAATGCCGGGGCGAGCAGCAGTGACAAGAATGCGGC
CTCGCTGAACTATGACAGCTTCCTGAAGCTCCTCATCGCCCAGATGAAGAACCAGGACCCAACCAGCCCGATGGATGCGG
GCCAGCAGATGTCGCAGCTGGCAAGCTTCTCGCAGGTCGAGCAGACGATCAAGACCAACACCCACCTGAAGAGCATGCTG
CAGGCGGAAGCCCTGACGCGCGCGTCCGATCTTGTCGGCAAGACCGTCATGAGCGCCGATGACAAGGTCACCGGCGTGGT
GAAGGAAGTGCAGGTCTTCTCCGACGGCATCGTCGCCGTGACGGAAGCCGGTGATAAAGTGCTGCTACAGGCCGGCGTGG
TCTTCTCCAACGGCCCAATCACGACTAAATCTGACGAAACGACGGCTGATTCGAACAACTCGGCCGGTTCCTGA

Upstream 100 bases:

>100_bases
TGAAGGCCATTCGCGGTCTCTACACGATCGAGGAAAAAATCCTCAGCAATCAGGAAATGACCCCGGCAACGATCGAACAG
ATTCGTAAGGAGATCGCACC

Downstream 100 bases:

>100_bases
TAGTGAGGCGGCATGATGCCGCCTCTATAAAACAAGGATGCGACGATGAACGAGGCCGATGCGCTTGATATCATGCAGGC
GGCAGTCTGGACTGTTCTCG

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: ORF 8 [H]

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MAVDAVNSAAANPWANAGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHLKSML
QAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVVFSNGPITTKSDETTADSNNSAGS

Sequences:

>Translated_157_residues
MAVDAVNSAAANPWANAGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHLKSML
QAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVVFSNGPITTKSDETTADSNNSAGS
>Mature_156_residues
AVDAVNSAAANPWANAGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHLKSMLQ
AEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVVFSNGPITTKSDETTADSNNSAGS

Specific function: Required For Flagellar Hook Formation. May Act As A Scaffolding Protein. [C]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 16285; Mature: 16154

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDAVNSAAANPWANAGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ASFSQVEQTIKTNTHLKSMLQAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEE
TEAGDKVLLQAGVVFSNGPITTKSDETTADSNNSAGS
ECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVDAVNSAAANPWANAGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ASFSQVEQTIKTNTHLKSMLQAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEE
TEAGDKVLLQAGVVFSNGPITTKSDETTADSNNSAGS
ECCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1828465; 9384377 [H]