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The map label for this gene is flgH

Identifier: 15887894

GI number: 15887894

Start: 537041

End: 537760

Strand: Reverse

Name: flgH

Synonym: Atu0548

Alternate gene names: 15887894

Gene position: 537760-537041 (Counterclockwise)

Preceding gene: 15887895

Following gene: 15887893

Centisome position: 18.92

GC content: 60.97

Gene sequence:

>720_bases
ATGAGCACGCGTCGTCTTCCGGCCCTCCTCCTGCCGCTCGCTCTCCTGGCCGGCTGCCAGAATAACCAGACCCTGAAGGA
AATCGGCAACGCACCCGCGATGAGCCCGATCGGCAGCGGCCTGCAATTCAGCCAGACACCGCAGATGGGCATGTATCCCA
AGCAGCCGAAACACATGGCAAGCGGCTATTCGCTGTGGAGCGACAGCCAGGGTGCGCTGTTCAAGGATCTGCGCGCACTC
AATATCGGCGACATCCTGACCGTTAACATCCAGATCAACGACAAGGCCGATTTCGACAACGAGACCGAGCGTAACCGCAC
CAATGCCAGTGGCCTGAACTGGAAGGCAAAAGCCCAGATCCTGGGCTGGACGCCGGATGCGGATTCCAGCATCAAATACG
GCTCCGACACCGACACACAGGCCAAGGGCAAGACCAAGCGCTCCGAAAAGCTGACGCTGCTGGTGGCTGCCGTCGTGACC
GGCATTCTGGAAAACGGCAACCTCATCATCAGCGGCTCGCAGGAAGTGCGTGTGAACCACGAAATCCGCATCCTCAACGT
CGGCGGTATCGTCCGTCCGCAGGATGTCGATGCCCAGAACATCATCTCCTACGAGCGCATCGCCGAAGCACGCATCTCCT
ACGGCGGTCGTGGCCGTCTGACGGAAGTGCAGCAGCCCCCGGTCGGGCAGCAGGTCGTTGACCTGTTCTCGCCGCTCTGA

Upstream 100 bases:

>100_bases
AATCGGGCCTCATCCTCAGCGAAATGGATGCGCAGAAAGCCGCAACCGTCGCCGGCATCATGTCGCAGGCAATCGACAAA
AACACTTCGAAGGATCCTTC

Downstream 100 bases:

>100_bases
CGCCGCACACGGGAACGGACTGACCCATGGAAAACGAACAGGCTGAGGGCAAAAAAAAATCCTCCCCTCTGGTCATGACC
ATCGCAGGCGTTGTGATCCT

Product: flagellar basal body L-ring protein

Products: NA

Alternate protein names: Basal body L-ring protein

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSTRRLPALLLPLALLAGCQNNQTLKEIGNAPAMSPIGSGLQFSQTPQMGMYPKQPKHMASGYSLWSDSQGALFKDLRAL
NIGDILTVNIQINDKADFDNETERNRTNASGLNWKAKAQILGWTPDADSSIKYGSDTDTQAKGKTKRSEKLTLLVAAVVT
GILENGNLIISGSQEVRVNHEIRILNVGGIVRPQDVDAQNIISYERIAEARISYGGRGRLTEVQQPPVGQQVVDLFSPL

Sequences:

>Translated_239_residues
MSTRRLPALLLPLALLAGCQNNQTLKEIGNAPAMSPIGSGLQFSQTPQMGMYPKQPKHMASGYSLWSDSQGALFKDLRAL
NIGDILTVNIQINDKADFDNETERNRTNASGLNWKAKAQILGWTPDADSSIKYGSDTDTQAKGKTKRSEKLTLLVAAVVT
GILENGNLIISGSQEVRVNHEIRILNVGGIVRPQDVDAQNIISYERIAEARISYGGRGRLTEVQQPPVGQQVVDLFSPL
>Mature_238_residues
STRRLPALLLPLALLAGCQNNQTLKEIGNAPAMSPIGSGLQFSQTPQMGMYPKQPKHMASGYSLWSDSQGALFKDLRALN
IGDILTVNIQINDKADFDNETERNRTNASGLNWKAKAQILGWTPDADSSIKYGSDTDTQAKGKTKRSEKLTLLVAAVVTG
ILENGNLIISGSQEVRVNHEIRILNVGGIVRPQDVDAQNIISYERIAEARISYGGRGRLTEVQQPPVGQQVVDLFSPL

Specific function: Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation

COG id: COG2063

COG function: function code N; Flagellar basal body L-ring protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgH family

Homologues:

Organism=Escherichia coli, GI1787319, Length=194, Percent_Identity=25.7731958762887, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGH_AGRT5 (Q44342)

Other databases:

- EMBL:   U39941
- EMBL:   U95165
- EMBL:   AE007869
- PIR:   AG2643
- PIR:   G97425
- RefSeq:   NP_353575.1
- STRING:   Q44342
- GeneID:   1132586
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0548
- eggNOG:   COG2063
- HOGENOM:   HBG507455
- OMA:   IDYDKIA
- PhylomeDB:   Q44342
- ProtClustDB:   PRK00249
- BioCyc:   ATUM176299-1:ATU0548-MONOMER
- HAMAP:   MF_00415
- InterPro:   IPR000527
- PRINTS:   PR01008

Pfam domain/function: PF02107 FlgH

EC number: NA

Molecular weight: Translated: 26011; Mature: 25880

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRRLPALLLPLALLAGCQNNQTLKEIGNAPAMSPIGSGLQFSQTPQMGMYPKQPKHMA
CCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHH
SGYSLWSDSQGALFKDLRALNIGDILTVNIQINDKADFDNETERNRTNASGLNWKAKAQI
CCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
LGWTPDADSSIKYGSDTDTQAKGKTKRSEKLTLLVAAVVTGILENGNLIISGSQEVRVNH
EECCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECC
EIRILNVGGIVRPQDVDAQNIISYERIAEARISYGGRGRLTEVQQPPVGQQVVDLFSPL
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
STRRLPALLLPLALLAGCQNNQTLKEIGNAPAMSPIGSGLQFSQTPQMGMYPKQPKHMA
CCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHH
SGYSLWSDSQGALFKDLRALNIGDILTVNIQINDKADFDNETERNRTNASGLNWKAKAQI
CCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
LGWTPDADSSIKYGSDTDTQAKGKTKRSEKLTLLVAAVVTGILENGNLIISGSQEVRVNH
EECCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECC
EIRILNVGGIVRPQDVDAQNIISYERIAEARISYGGRGRLTEVQQPPVGQQVVDLFSPL
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9161424; 11743193; 11743194