Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15887815
Identifier: 15887815
GI number: 15887815
Start: 459236
End: 459649
Strand: Direct
Name: 15887815
Synonym: Atu0468
Alternate gene names: NA
Gene position: 459236-459649 (Clockwise)
Preceding gene: 159184317
Following gene: 159184321
Centisome position: 16.16
GC content: 53.38
Gene sequence:
>414_bases ATGTCTTCCGATTCCAATTTTTCTGAGATCTCTCCTGAGGAAATGGAGATAATTCAGTCAGTCTTGAAGAGCGCTGGTTA TAACGCCGCGTTGCTGGGTGATGATCAGCGACAATTCAACACGGCCGCATTTCTTGTAATGAGCCTGTTTCTCGCGGGCG AGAAATCCGCAGATGCGCTCGCAGCCCAACTGAAACGCCGTCTTGGGAGGGCGAGTTTCCATAGACCCTCCTACCAGTCG GCGCTTGCGCCTTATGCCATTCGTGGACTGCCCCGCAACATGAGGTATGTCCTTCAATTCTCCCGTAAAGGCTCTGCCCG ATCAATTGAAGCGGAGGAGCAGTCTTGGGAAAATGAAGGCGGCGCAGTACGCCGTCCCCTTGGTCATCCCCATCACCGTC CACAACTGTTTTGA
Upstream 100 bases:
>100_bases TTGGGTGTCATTCAGGCGCAGTGTTAAGTTATCGGTAGACACGTCAAGGGCGCTACTGATTTAGGGCGCGTTACCCTAGC CCCAATAAGAGGAGGACGAG
Downstream 100 bases:
>100_bases TCAGGAAGAGCGTGGGCAGTCCCATTATCCATTGCGCCTTTCAGCGAGAGGCGACTCAATAGAACAGAGGATACCGGAGA CATGATAGAGAGAACAACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MSSDSNFSEISPEEMEIIQSVLKSAGYNAALLGDDQRQFNTAAFLVMSLFLAGEKSADALAAQLKRRLGRASFHRPSYQS ALAPYAIRGLPRNMRYVLQFSRKGSARSIEAEEQSWENEGGAVRRPLGHPHHRPQLF
Sequences:
>Translated_137_residues MSSDSNFSEISPEEMEIIQSVLKSAGYNAALLGDDQRQFNTAAFLVMSLFLAGEKSADALAAQLKRRLGRASFHRPSYQS ALAPYAIRGLPRNMRYVLQFSRKGSARSIEAEEQSWENEGGAVRRPLGHPHHRPQLF >Mature_136_residues SSDSNFSEISPEEMEIIQSVLKSAGYNAALLGDDQRQFNTAAFLVMSLFLAGEKSADALAAQLKRRLGRASFHRPSYQSA LAPYAIRGLPRNMRYVLQFSRKGSARSIEAEEQSWENEGGAVRRPLGHPHHRPQLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15293; Mature: 15162
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDSNFSEISPEEMEIIQSVLKSAGYNAALLGDDQRQFNTAAFLVMSLFLAGEKSADAL CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHH AAQLKRRLGRASFHRPSYQSALAPYAIRGLPRNMRYVLQFSRKGSARSIEAEEQSWENEG HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCC GAVRRPLGHPHHRPQLF CCEECCCCCCCCCCCCC >Mature Secondary Structure SSDSNFSEISPEEMEIIQSVLKSAGYNAALLGDDQRQFNTAAFLVMSLFLAGEKSADAL CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHH AAQLKRRLGRASFHRPSYQSALAPYAIRGLPRNMRYVLQFSRKGSARSIEAEEQSWENEG HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCC GAVRRPLGHPHHRPQLF CCEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA