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The map label for this gene is ymdB [C]

Identifier: 57652585

GI number: 57652585

Start: 402419

End: 403219

Strand: Direct

Name: ymdB [C]

Synonym: SACOL0396

Alternate gene names: 57652585

Gene position: 402419-403219 (Clockwise)

Preceding gene: 57652584

Following gene: 57652586

Centisome position: 14.32

GC content: 35.96

Gene sequence:

>801_bases
ATGGAAACGTTAAAATCAAATAAAGCGAGACTTGAATATTTAATCAATGATATGCATCGAGAGAGAAATGACAATGACGT
ATTGGTAATGCCATCTTCATTTGAAGATTTGTGGGAATTATATCGAGGCTTAGCAAATGTCAGACCGGCATTACCTGTAA
GTGATGAATATTTAGCTGTACAAGATGCTATGTTAAGTGATTTGAATCGTCAACATGTTACGGATTTGAAGGATTTGAAG
CCGATAAAAGGTGACAATATCTTTGTTTGGCAAGGTGATATCACGACGTTAAAAATCGATGCTATTGTTAATGCTGCAAA
TAGTCGTTTTCTAGGATGTATGCAAGCTAATCATGACTGCATTGATAATATTATTCATACAAAAGCGGGTGTTCAAGTTC
GACTTGATTGTGCAGAGATCATTCGACAACAAGGGCGCAATGAAGGTGTAGGTAAAGCCAAAATAACACGTGGATATAAT
TTGTCAGCAAAGTATATAATTCATACGGTTGGTCCGCAAATACGTCGATTGCCTGTTTCAAAGATGAATCAGGACTTGTT
AGCTAAATGTTATCTTAGCTGTCTTAAATTGGCTGATCAACATAGTTTAAATCATGTCGCTTTTTGCTGTATATCTACAG
GTGTATTTGCTTTTCCTCAAGATGAAGCAGCAGAAATTGCTGTTCGAACAGTAGAAAGCTATCTCAAAGAAACAAATTCA
ACATTGAAAGTCGTGTTCAATGTATTTACAGATAAGGATTTACAACTGTATAAGGAGGCATTTAACCGTGATGCAGAGTA
G

Upstream 100 bases:

>100_bases
AGAACCGACAATTTTAAACTCTGAAAAACCAGAAGAAAATTGGTTGTTCAAATTGGATGATGTCGATAAAGAAGCATTCC
TAGCATTACCGGAGGCTTAA

Downstream 100 bases:

>100_bases
TAAGTGGAATGCAATGTCTCTGTTAATGGATGACAAGACAAAGCAGGCTGAAGTATTGCGTACTGCGATTGATGAAGCAG
ATGCGATAGTGATTGGAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
METLKSNKARLEYLINDMHRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNRQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYN
LSAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEAFNRDAE

Sequences:

>Translated_266_residues
METLKSNKARLEYLINDMHRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNRQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYN
LSAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEAFNRDAE
>Mature_266_residues
METLKSNKARLEYLINDMHRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAVQDAMLSDLNRQHVTDLKDLK
PIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYN
LSAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
TLKVVFNVFTDKDLQLYKEAFNRDAE

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=180, Percent_Identity=39.4444444444444, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI13569840, Length=175, Percent_Identity=41.1428571428571, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI207450721, Length=163, Percent_Identity=33.1288343558282, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI8923143, Length=163, Percent_Identity=33.1288343558282, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI20336746, Length=171, Percent_Identity=29.2397660818713, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI154813199, Length=180, Percent_Identity=27.2222222222222, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI93141018, Length=162, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI93141020, Length=162, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI4758496, Length=162, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1787283, Length=181, Percent_Identity=38.121546961326, Blast_Score=108, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17538214, Length=178, Percent_Identity=39.8876404494382, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24586353, Length=157, Percent_Identity=36.3057324840764, Blast_Score=92, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 30119; Mature: 30119

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLKSNKARLEYLINDMHRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAV
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
QDAMLSDLNRQHVTDLKDLKPIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDC
HHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEHHHHHHCCCCCEEEHHHCCHHH
IDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYNLSAKYIIHTVGPQIRRLPVS
HHHHHHCCCCCEEEECHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEECCCHHHHCCHH
KMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCC
TLKVVFNVFTDKDLQLYKEAFNRDAE
HHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
METLKSNKARLEYLINDMHRERNDNDVLVMPSSFEDLWELYRGLANVRPALPVSDEYLAV
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
QDAMLSDLNRQHVTDLKDLKPIKGDNIFVWQGDITTLKIDAIVNAANSRFLGCMQANHDC
HHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEHHHHHHCCCCCEEEHHHCCHHH
IDNIIHTKAGVQVRLDCAEIIRQQGRNEGVGKAKITRGYNLSAKYIIHTVGPQIRRLPVS
HHHHHHCCCCCEEEECHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEECCCHHHHCCHH
KMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKETNS
HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHCCC
TLKVVFNVFTDKDLQLYKEAFNRDAE
HHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA