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The map label for this gene is rbsD

Identifier: 57652529

GI number: 57652529

Start: 294763

End: 295167

Strand: Reverse

Name: rbsD

Synonym: SACOL0254

Alternate gene names: 57652529

Gene position: 295167-294763 (Counterclockwise)

Preceding gene: 57652530

Following gene: 57652528

Centisome position: 10.51

GC content: 32.1

Gene sequence:

>405_bases
ATGAAAAAATCAGCTGTTTTAAATGAACATATTTCAAAAGCAATCGCGACAATTGGTCATTTTGATTTATTAACGATTAA
TGACGCTGGCATGCCAATTCCAAATGATCATCGTCGTATCGACCTAGCTGTAACTAAAAACTTACCACGCTTTATTGATG
TCTTAGCTACAGTGTTAGAAGAAATGGAAATCCAAAAAATATACTTAGCAGAAGAAATAAAAGAACATAACCCTACACAA
TTGCAACAAATTAAACAATTGATTTCATCGGAAATCGAAATCATTTTCATTCCTCACGAAGAAATGAAAAGTAACTTAGC
TCACCCATTAAATAAAGGTAATATTCGTACTGGTGAAACAACGCCCTACTCTAATATTGCATTAGAATCGAATGTTACTT
TTTAA

Upstream 100 bases:

>100_bases
ATAAAACGTCAAAAGAAATGGTTATTACAATCATCGGCTTAGTACTCATTTTAGTAGCCGCTTCTGTTACAGTATTTATA
AAATAAGGAGTGTAGATGTC

Downstream 100 bases:

>100_bases
AAGTTATAACTTGAAAGGAGCGTACACATGACCAACAAAGTTGTTATTTTAGGTTCAACGAATGTCGATCAATTTTTAAC
AGTTGAAAGATATGCACAAC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQ
LQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF

Sequences:

>Translated_134_residues
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQ
LQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
>Mature_134_residues
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQ
LQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=141, Percent_Identity=43.2624113475177, Blast_Score=119, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_STAA1 (A7WXT5)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001440858.1
- ProteinModelPortal:   A7WXT5
- SMR:   A7WXT5
- STRING:   A7WXT5
- EnsemblBacteria:   EBSTAT00000005005
- GeneID:   5559687
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_0268
- eggNOG:   COG1869
- GeneTree:   EBGT00050000025118
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   SAUR418127:SAHV_0268-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15166; Mature: 15166

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 99-99

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLE
CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
EMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGET
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCCCCCCCC
TPYSNIALESNVTF
CCCCCEEECCCCCC
>Mature Secondary Structure
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLE
CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
EMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGET
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCCCCCCCC
TPYSNIALESNVTF
CCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA