| Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
|---|---|
| Accession | NC_002951 |
| Length | 2,809,422 |
Click here to switch to the map view.
The map label for this gene is oppD [H]
Identifier: 57652281
GI number: 57652281
Start: 2529566
End: 2530381
Strand: Reverse
Name: oppD [H]
Synonym: SACOL2473
Alternate gene names: 57652281
Gene position: 2530381-2529566 (Counterclockwise)
Preceding gene: 57652282
Following gene: 57652280
Centisome position: 90.07
GC content: 35.17
Gene sequence:
>816_bases ATGACATTGTTAACAGTTAAACATTTGACGATTACAGATACCTGGACAGATCAACCACTCGTGAGTGATGTGAATTTTAC ATTAACTAAGGGTGAAACTTTAGGCGTTATTGGAGAAAGTGGTAGTGGTAAATCAATCACTTGTAAATCGATTATTGGTT TGAATCCCGAACGACTCGGGGTGACAGGTGAAATTATCTTTGATGGTACATCAATGTTGTCATTATCTGAATCGCAATTG AAAAAGTACCGTGGTAAAGACATTGCGATGGTCATGCAACAAGGTAGTCGTGCCTTTGACCCATCAACTACTGTCGGTAA ACAAATGTTTGAGACTATGAAAGTACATACGTCAATGTCTACACAAGAAATTGAAAAGACATTGATTGAATATATGGATT ATTTAAGTTTGAAAGATCCTAAACGTATATTAAAATCATACCCTTACATGTTATCAGGAGGAATGTTACAGCGATTGATG ATTGCTTTAGCGTTAGCTTTGAAACCAAAGTTAATCATTGCTGATGAGCCGACAACGGCTTTAGATACAATTACACAATA TGATGTACTGGAAGCATTTATAGATATTAAAAAACACTTTGACTGTGCGATGATTTTCATTTCACATGATTTAACGGTTA TTAACAAGATTGCAGACCGTGTTGTTGTGATGAAAAATGGTCAGCTTATTGAACAAGGGACACGTGAATCAGTCTTGCAT CATCCAGAACATGTTTATACGAAGTATTTATTATCAACGAAGAAGAAGATTAATGATCATTTTAAACATGTGATGAGGGG TGATGTACATGATTAA
Upstream 100 bases:
>100_bases TGGCATTTAACTTCTTATCCGATGCTTTACAAATTGCTATTGATCCCCGCATCTCTTCTAAAGATAAACTTCGTTCTGTG AAAAAAGGAGTGGTGCAATC
Downstream 100 bases:
>100_bases AATTAAAGATGTTGAAAAGTCATATCAAAGCGCACATGTTTTTAAGCGTCGTCGAACACCTATCGTGAAAGGTGTGTCAT TTGAGTGTCCAATCGGTGCG
Product: peptide ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLGVTGEIIFDGTSMLSLSESQL KKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLM IALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
Sequences:
>Translated_271_residues MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLGVTGEIIFDGTSMLSLSESQL KKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLM IALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD >Mature_270_residues TLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLGVTGEIIFDGTSMLSLSESQLK KYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMI ALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLHH PEHVYTKYLLSTKKKINDHFKHVMRGDVHD
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=255, Percent_Identity=28.2352941176471, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI42741659, Length=235, Percent_Identity=29.3617021276596, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4505771, Length=233, Percent_Identity=29.1845493562232, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961252, Length=233, Percent_Identity=29.1845493562232, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961250, Length=234, Percent_Identity=30.3418803418803, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI171184400, Length=248, Percent_Identity=27.0161290322581, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI9955963, Length=227, Percent_Identity=27.3127753303965, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI116734710, Length=216, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI9955968, Length=238, Percent_Identity=26.4705882352941, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9955966, Length=238, Percent_Identity=26.4705882352941, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI45243524, Length=238, Percent_Identity=26.4705882352941, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI6005701, Length=236, Percent_Identity=25.8474576271186, Blast_Score=69, Evalue=6e-12, Organism=Escherichia coli, GI48994883, Length=259, Percent_Identity=38.996138996139, Blast_Score=200, Evalue=8e-53, Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=37.3540856031128, Blast_Score=192, Evalue=3e-50, Organism=Escherichia coli, GI145693107, Length=266, Percent_Identity=37.218045112782, Blast_Score=189, Evalue=2e-49, Organism=Escherichia coli, GI1787759, Length=251, Percent_Identity=37.8486055776892, Blast_Score=186, Evalue=1e-48, Organism=Escherichia coli, GI1789963, Length=255, Percent_Identity=36.078431372549, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1787548, Length=276, Percent_Identity=33.3333333333333, Blast_Score=167, Evalue=1e-42, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=37.5527426160338, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI1787500, Length=254, Percent_Identity=37.4015748031496, Blast_Score=160, Evalue=8e-41, Organism=Escherichia coli, GI1789962, Length=235, Percent_Identity=35.3191489361702, Blast_Score=155, Evalue=2e-39, Organism=Escherichia coli, GI1789891, Length=238, Percent_Identity=34.0336134453782, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI48994997, Length=233, Percent_Identity=33.9055793991416, Blast_Score=135, Evalue=2e-33, Organism=Escherichia coli, GI1786398, Length=240, Percent_Identity=34.1666666666667, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1787547, Length=276, Percent_Identity=30.4347826086957, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=32.3144104803493, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI1787758, Length=239, Percent_Identity=30.9623430962343, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=29.6442687747036, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1789672, Length=247, Percent_Identity=28.7449392712551, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87081791, Length=251, Percent_Identity=28.2868525896414, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788450, Length=267, Percent_Identity=27.3408239700375, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=29.9107142857143, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=25.7510729613734, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786703, Length=235, Percent_Identity=27.6595744680851, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=25.4098360655738, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787089, Length=231, Percent_Identity=29.004329004329, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787370, Length=236, Percent_Identity=25, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789586, Length=241, Percent_Identity=24.896265560166, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790162, Length=229, Percent_Identity=27.9475982532751, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=28.8372093023256, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787143, Length=244, Percent_Identity=29.5081967213115, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=30.0411522633745, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1790467, Length=253, Percent_Identity=24.901185770751, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789593, Length=250, Percent_Identity=27.6, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=27.0531400966184, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786654, Length=243, Percent_Identity=25.9259259259259, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=27.7511961722488, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787182, Length=260, Percent_Identity=27.6923076923077, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790190, Length=227, Percent_Identity=27.3127753303965, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI87082267, Length=262, Percent_Identity=25.9541984732824, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787112, Length=244, Percent_Identity=26.2295081967213, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI48994943, Length=244, Percent_Identity=25.8196721311475, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1788165, Length=236, Percent_Identity=23.728813559322, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI48995001, Length=225, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1790739, Length=262, Percent_Identity=25.1908396946565, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=29.1079812206573, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788644, Length=126, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786698, Length=211, Percent_Identity=26.5402843601896, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787105, Length=209, Percent_Identity=27.7511961722488, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=25.9574468085106, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788210, Length=227, Percent_Identity=25.9911894273128, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786253, Length=233, Percent_Identity=23.6051502145923, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71992290, Length=244, Percent_Identity=31.1475409836066, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI193208177, Length=251, Percent_Identity=26.6932270916335, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI212646699, Length=265, Percent_Identity=24.9056603773585, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17541710, Length=239, Percent_Identity=29.7071129707113, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17558664, Length=230, Percent_Identity=32.1739130434783, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI115535101, Length=235, Percent_Identity=29.3617021276596, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567269, Length=241, Percent_Identity=28.2157676348548, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193209708, Length=237, Percent_Identity=27.4261603375527, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17567265, Length=228, Percent_Identity=28.9473684210526, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17569145, Length=236, Percent_Identity=27.1186440677966, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17569143, Length=227, Percent_Identity=28.1938325991189, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193202349, Length=255, Percent_Identity=28.6274509803922, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565938, Length=253, Percent_Identity=26.4822134387352, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17551702, Length=237, Percent_Identity=29.957805907173, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17551700, Length=237, Percent_Identity=29.957805907173, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115534520, Length=219, Percent_Identity=26.027397260274, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193211015, Length=232, Percent_Identity=26.7241379310345, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193211017, Length=232, Percent_Identity=26.7241379310345, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71996809, Length=232, Percent_Identity=26.7241379310345, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71984940, Length=228, Percent_Identity=26.7543859649123, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=256, Percent_Identity=27.734375, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6322640, Length=237, Percent_Identity=27.8481012658228, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=232, Percent_Identity=25.4310344827586, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=255, Percent_Identity=27.0588235294118, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357907, Length=237, Percent_Identity=25.7383966244726, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI281363262, Length=228, Percent_Identity=29.8245614035088, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24653245, Length=228, Percent_Identity=29.8245614035088, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=24.0909090909091, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI23397593, Length=248, Percent_Identity=25, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24659289, Length=231, Percent_Identity=28.1385281385281, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581387, Length=226, Percent_Identity=23.0088495575221, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581383, Length=222, Percent_Identity=23.4234234234234, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581385, Length=222, Percent_Identity=23.4234234234234, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581191, Length=216, Percent_Identity=28.7037037037037, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24581189, Length=216, Percent_Identity=28.7037037037037, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24581193, Length=216, Percent_Identity=28.7037037037037, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24581195, Length=216, Percent_Identity=28.7037037037037, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30469; Mature: 30338
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG CCEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEHHHHCCCHHHCC VTGEIIFDGTSMLSLSESQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS CEEEEEECCCHHHHCCHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA HHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCEEEEECCCCHH LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLH HHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHEEEEEECCCHHHCCCHHHHHH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIIGLNPERLG CEEEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEHHHHCCCHHHCC VTGEIIFDGTSMLSLSESQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMS CEEEEEECCCHHHHCCHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC TQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTA HHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCEEEEECCCCHH LDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEQGTRESVLH HHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHEEEEEECCCHHHCCCHHHHHH HPEHVYTKYLLSTKKKINDHFKHVMRGDVHD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]