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The map label for this gene is ureD

Identifier: 57652226

GI number: 57652226

Start: 2345808

End: 2346644

Strand: Direct

Name: ureD

Synonym: SACOL2286

Alternate gene names: 57652226

Gene position: 2345808-2346644 (Clockwise)

Preceding gene: 57652225

Following gene: 57652231

Centisome position: 83.5

GC content: 30.94

Gene sequence:

>837_bases
ATGGATGAACAACAATGGACTGGGCAACTTGATTTAACAGTGTTTTTCGATGGCAATCGATCAGTATCAAGAGATATTTT
CTTTGAAAAAGCACTTAAAGTGATACGTCCAGTTTATCTAAATCAATCTACCATTCCTACATTTTATATAGTAAATGTAG
GTGGTGGCTATTTAGATGGAGATCGTTACCGTATGAATGTGAATGTCGAAGATAACGCTAAAGTGACATTGACATCTCAA
GGTGCAACAAAAATATACAAGACACCTTCCAATCATGTTGAGCAGTATCAAACTTTTAATTTGAAAGATAACGCATATTT
AGAATATGTCGCTGATCCAATCATCGCATATGAAAATGCTAAATTTTATCAACACAATACGTTCAATCTCAATAATTCTA
GTTCATTATTTTATACTGATATTTTAACTCCTGGTTATTCAAAAACTGGCGAAGCCTTCAAGTATCAATATATGCATTTA
ATAAATGAAATTTATATTGAAGATGAGTTAGTCACATATGATAATTTATTATTGAATCCTAATAAACAATCGATCAATGA
AATAGGTTATATGGAACATTACTCTCATTATGGCTCTGCTTACTTCATACACGAAGATGTTAACCAAAAACTAATCGATT
CAGTTTATGAAACCATTAGTTCTTATAGCAATACATTCGATTGTCGTGTTGCTATTTCTCAATTGCCTACACATGGTTTT
GCAGTTAGAATTTTTGCTTATCGCACACAAATTATAGAGAAAATACTTGGAACCATCCAAAGCTATATCGCAGAAAATAT
TTATGATCGTAAACTTGATTTTCTAAGAAAATATTAA

Upstream 100 bases:

>100_bases
GTAAACGTCCATTTACTTTTACTAACTTAAAAACCGACGAAGGTTTGGATGAAGTTATCGATTGGATTGAACGCGACACT
TTACTCAAAGGATTATCATA

Downstream 100 bases:

>100_bases
AATAAAAAGACTAGTGTACCTTATTTCAAGCTTAATAAGCTGAAATAAGGTATGGCTAGTCTTTAACTTTAATTAAAGCA
TCTTCAATATTTAAATTTTA

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDEQQWTGQLDLTVFFDGNRSVSRDIFFEKALKVIRPVYLNQSTIPTFYIVNVGGGYLDGDRYRMNVNVEDNAKVTLTSQ
GATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHL
INEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGF
AVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY

Sequences:

>Translated_278_residues
MDEQQWTGQLDLTVFFDGNRSVSRDIFFEKALKVIRPVYLNQSTIPTFYIVNVGGGYLDGDRYRMNVNVEDNAKVTLTSQ
GATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHL
INEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGF
AVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY
>Mature_278_residues
MDEQQWTGQLDLTVFFDGNRSVSRDIFFEKALKVIRPVYLNQSTIPTFYIVNVGGGYLDGDRYRMNVNVEDNAKVTLTSQ
GATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENAKFYQHNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHL
INEIYIEDELVTYDNLLLNPNKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGF
AVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_STAA2 (A6U418)

Other databases:

- EMBL:   CP000736
- RefSeq:   YP_001317473.1
- STRING:   A6U418
- EnsemblBacteria:   EBSTAT00000015863
- GeneID:   5315376
- GenomeReviews:   CP000736_GR
- KEGG:   sah:SaurJH1_2361
- eggNOG:   COG0829
- GeneTree:   EBGT00050000024738
- HOGENOM:   HBG693939
- OMA:   SELIYGE
- ProtClustDB:   CLSK885870
- BioCyc:   SAUR359787:SAURJH1_2361-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 32438; Mature: 32438

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQQWTGQLDLTVFFDGNRSVSRDIFFEKALKVIRPVYLNQSTIPTFYIVNVGGGYLDG
CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEECC
DRYRMNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENA
CEEEEEEEECCCCEEEEEECCCEEEEECCCHHHHHHEEECCCCCCHHHHHHCCEEEECCC
KFYQHNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNP
EEEECCEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCEEECC
NKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGF
CHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCE
AVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDEQQWTGQLDLTVFFDGNRSVSRDIFFEKALKVIRPVYLNQSTIPTFYIVNVGGGYLDG
CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEECC
DRYRMNVNVEDNAKVTLTSQGATKIYKTPSNHVEQYQTFNLKDNAYLEYVADPIIAYENA
CEEEEEEEECCCCEEEEEECCCEEEEECCCHHHHHHEEECCCCCCHHHHHHCCEEEECCC
KFYQHNTFNLNNSSSLFYTDILTPGYSKTGEAFKYQYMHLINEIYIEDELVTYDNLLLNP
EEEECCEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCEEECC
NKQSINEIGYMEHYSHYGSAYFIHEDVNQKLIDSVYETISSYSNTFDCRVAISQLPTHGF
CHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCE
AVRIFAYRTQIIEKILGTIQSYIAENIYDRKLDFLRKY
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA