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The map label for this gene is ybeY [C]

Identifier: 57651963

GI number: 57651963

Start: 1657413

End: 1657880

Strand: Reverse

Name: ybeY [C]

Synonym: SACOL1627

Alternate gene names: 57651963

Gene position: 1657880-1657413 (Counterclockwise)

Preceding gene: 57651964

Following gene: 57651962

Centisome position: 59.01

GC content: 32.26

Gene sequence:

>468_bases
ATGTTTACGATAGATTTTAGCGATCACACAGGCTTAGTTAAAGATGCTTGGTATAAACAAATTGAAGATTTATTAGAATT
TGCTAAAAAAGAAGAGCATATAGAAGACGATGCTGAGCTTTCTGTTACATTTGTAGATAAACAAGAAATACAAGAAATTA
ATCGAACATATAGAGATAAAGATAAAGTTACAGATGTAATCTCATTTGCTTTAGAAGAAGATGAGCCAGAGATTGATTTT
AGTGGTCTTGATATACCACGTGTTTTAGGGGATATAATTATCTGTACGGATGTAGCGCAAGAACAAGCAAACAATTACGG
ACATTCTTTTGAACGAGAATTAGGATTTTTAGCATTACATGGATTTTTGCATCTATTAGGTTATGATCATATGACTGAAG
CGGATGAAAAGGAAATGTTTGGTCGACAAGATACAATATTAAACGCATATGGATTAACACGAGACTAA

Upstream 100 bases:

>100_bases
CAACGTTAAAGGTATAAGTATATTGAAATTAGATCAGAGCGATGTAGTCAGACATCCATTGGTAAGTAAGATCATTGAAC
ATTATGAAGGAGAGAATTAA

Downstream 100 bases:

>100_bases
TTATGAAAAGGTTTAAATATGCACTTGATGGGCTGAAAATCTTAATTCAAAAAGACTATAAATTTCTTTTACATGTGTTT
GCAATGATTGTTGCTATTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDF
SGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD

Sequences:

>Translated_155_residues
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDF
SGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD
>Mature_155_residues
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDF
SGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=115, Percent_Identity=35.6521739130435, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1786880, Length=117, Percent_Identity=35.8974358974359, Blast_Score=76, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_STAA1 (A7X2W8)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442147.1
- ProteinModelPortal:   A7X2W8
- SMR:   A7X2W8
- STRING:   A7X2W8
- EnsemblBacteria:   EBSTAT00000005000
- GeneID:   5560848
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1557
- eggNOG:   COG0319
- GeneTree:   EBGT00050000025209
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- ProtClustDB:   CLSK2392227
- BioCyc:   SAUR418127:SAHV_1557-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17952; Mature: 17952

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDK
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHCCH
DKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALH
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD
HHHHHHCCCCCCCCHHHHHCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MFTIDFSDHTGLVKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDK
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHCCH
DKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALH
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GFLHLLGYDHMTEADEKEMFGRQDTILNAYGLTRD
HHHHHHCCCCCCCCHHHHHCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA