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The map label for this gene is fni [H]

Identifier: 57650889

GI number: 57650889

Start: 2401035

End: 2402084

Strand: Reverse

Name: fni [H]

Synonym: SACOL2341

Alternate gene names: 57650889

Gene position: 2402084-2401035 (Counterclockwise)

Preceding gene: 57650890

Following gene: 57650886

Centisome position: 85.5

GC content: 37.81

Gene sequence:

>1050_bases
ATGAGTGATTTTCAAAGAGAACAGAGAAAAAATGAACATGTTGAAATAGCAATGGCCCAATCTGACGCAATGCATTCAGA
TTTTGATAAGATGCGTTTTGTGCATCATTCTATCCCATCAATTAATGTAAATGATATCGATTTGACATCACAGACGCCTG
ACTTAACGATGGCATATCCGGTTTATATTAATGCAATGACGGGTGGTAGCGAGTGGACGAAAAACATCAATGAAAAGCTA
GCTGTAGTTGCAAGAGAAACTGGCTTAGCGATGGCAGTTGGATCAACACATGCGGCATTGAGAAATCCACGCATGGCTGA
GACGTTTACGATTGCGCGAAAAATGAATCCTGAAGGCATGATTTTTAGCAATGTTGGTGCGGACGTACCAGTAGAAAAGG
CTTTGGAAGCAGTTGAATTACTTGAGGCACAAGCGTTACAAATCCATGTTAATTCTCCTCAAGAATTAGTTATGCCTGAA
GGGAATCGTGAATTTGTGACTTGGTTAGATAATATAGCGTCGATTGTATCACGAGTGTCTGTTCCAGTCATTATAAAAGA
AGTTGGATTTGGTATGAGCAAAGAATTAATGCATGACTTACAACAAATAGGCGTCAAGTATGTCGATGTTAGTGGCAAAG
GTGGTACTAACTTTGTAGATATTGAAAATGAACGTCGTGCAAATAAAGATATGGATTACTTATCATCATGGGGACAGTCT
ACAGTTGAGTCATTACTTGAAACAACGGCTTATCAAAGCGAAATTTCAGTTTTCGCGAGTGGTGGTTTACGTACACCACT
CGATGCAATTAAAAGTTTAGCACTTGGTGCAAAGGCAACTGGTATGTCACGTCCGTTTTTAAATCAAGTTGAAAATAATG
GCATTGCACATACAGTAGCTTATGTAGAATCATTTATTGAACACATGAAATCAATAATGACGATGTTAGATGCTAAAAAT
ATTGACGACTTAACACAAAAACAAATCGTATTTAGTCCGGAAATATTGTCATGGATAGAACAACGTAACTTGAATATACA
TCGAGGATAA

Upstream 100 bases:

>100_bases
TTGCTTAGCTGTAATGTTTGTTATAGCTGTCGTATTAATCATCTTTTTCAGACGTAAAAAATGGTTTTAAATTAGAAATG
ACGAAAAGGTAGGTTTAATC

Downstream 100 bases:

>100_bases
ATAAAAGAGGAGGCGAAGGCCTCCTCTTTTATTTATGAGTTTGGTGTTTAACTAAACCATTGTATGAATCCCATAATGAC
TATAACACCAATTAAATCGA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYPVYINAMTGGSEWTKNINEKL
AVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGMIFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPE
GNREFVTWLDNIASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVAYVESFIEHMKSIMTMLDAKN
IDDLTQKQIVFSPEILSWIEQRNLNIHRG

Sequences:

>Translated_349_residues
MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYPVYINAMTGGSEWTKNINEKL
AVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGMIFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPE
GNREFVTWLDNIASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVAYVESFIEHMKSIMTMLDAKN
IDDLTQKQIVFSPEILSWIEQRNLNIHRG
>Mature_348_residues
SDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYPVYINAMTGGSEWTKNINEKLA
VVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGMIFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEG
NREFVTWLDNIASIVSRVSVPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQST
VESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVAYVESFIEHMKSIMTMLDAKNI
DDLTQKQIVFSPEILSWIEQRNLNIHRG

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 38771; Mature: 38639

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
CCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEE
VYINAMTGGSEWTKNINEKLAVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
EEEEEECCCHHHHHHHHHHHHHEECCCCCEEEECCHHHHHCCCCHHHHHHHHHHCCCCCE
IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
EEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCHHEECCCCCHHHHHHHHHHHHHHHHHC
VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
HHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCEEEECCCHHCCCCCHHHHHHCCHH
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHH
YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEILSWIEQRNLNIHRG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHEEECHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SDFQREQRKNEHVEIAMAQSDAMHSDFDKMRFVHHSIPSINVNDIDLTSQTPDLTMAYP
CHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEE
VYINAMTGGSEWTKNINEKLAVVARETGLAMAVGSTHAALRNPRMAETFTIARKMNPEGM
EEEEEECCCHHHHHHHHHHHHHEECCCCCEEEECCHHHHHCCCCHHHHHHHHHHCCCCCE
IFSNVGADVPVEKALEAVELLEAQALQIHVNSPQELVMPEGNREFVTWLDNIASIVSRVS
EEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCHHEECCCCCHHHHHHHHHHHHHHHHHC
VPVIIKEVGFGMSKELMHDLQQIGVKYVDVSGKGGTNFVDIENERRANKDMDYLSSWGQS
HHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCEEEECCCHHCCCCCHHHHHHCCHH
TVESLLETTAYQSEISVFASGGLRTPLDAIKSLALGAKATGMSRPFLNQVENNGIAHTVA
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHH
YVESFIEHMKSIMTMLDAKNIDDLTQKQIVFSPEILSWIEQRNLNIHRG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHEEECHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA