| Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
|---|---|
| Accession | NC_002951 |
| Length | 2,809,422 |
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The map label for this gene is yhxD [H]
Identifier: 57650870
GI number: 57650870
Start: 2382111
End: 2382992
Strand: Reverse
Name: yhxD [H]
Synonym: SACOL2321
Alternate gene names: 57650870
Gene position: 2382992-2382111 (Counterclockwise)
Preceding gene: 57650871
Following gene: 57650869
Centisome position: 84.82
GC content: 39.34
Gene sequence:
>882_bases ATGGCAGCTCAAGATCCTAGAACAAAATTTAAAACAACGGATTATGAAAAACAAGAACAAGAGGTACCGGGTTTACAATC TGAAATGACGCCAGCACCCGATTGTGGCGAAACGTCTTACCAAGGTCATCAACGCTTACAAGGCTATAAAATATTAGTCA CAGGTGGTGACTCAGCAATAGGGCGTGCAGCAGCAATTGCGTATGCTAAAGAAGGTGCAGATGTAGCGATTAACTATCTT CCGAGTGAAGAACAAGATGCACAAGAAGTACGCCAAGTGATTGAAGAAAGTGGTCAAAAGGCAGTGTTAATTCCTGGTGA TATAAGAGATGAACAGTTCAACTATGACCTTGTTGAACAAGCATATCAACAATTAGGTGGCTTAGATAATGTTACTTTAG TTGCTGGACATCAACAGTATCATGATGATATTCATGGATTTACAACTGAGGCATTTACAGAAACATTTGAAACGAATGTC TATCCGCTATTTTGGACAGTTCAAAAAGCATTGGAATATTTAAAACCGGGTGCGTCAATTACAACGACATCATCTGTACA AGGTTATAATCCTAGTCCTATTCTTCATGATTATGCCGCTTCAAAAGCAGCAATTATTTCATTAACTAAAAGTTTTTCAG AAGAATTAGGACCAAAAGGAATTAGAGTGAACTGTGTAGCGCCTGGTCCATTCTGGTCACCATTACAAATTTCTGGTGGA CAACCTCAAAGTAAAATCCCAACATTTGGTCAAAAAACACCTTTAGGTCGTGCAGGTCAACCTGTTGAGTTATGTGGAAC TTATGTGCTATTAGCGTCAGAAGAATCAAGTTATACAACCGGACAAGTGTTCGGTGTTAGCGGTGGAGTGCAAATAGATT AG
Upstream 100 bases:
>100_bases TTTTTATAAAGAAGAAAGTAATTTTTAGTGTAATCATGATTAAGTTCCTAGGAAGATTGGGTAAATAATAACCATTAAGC GAATAAGGAGATGTAAAAAA
Downstream 100 bases:
>100_bases GTTTGTATGAAGCTTTTAATTGAACAACATAATATTAATTTAGTTACTTCAATCCATTAAATTAAAATGAATTGGTGAAG TGTATTTTAAATAGTCGGTA
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: ORFY [H]
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MAAQDPRTKFKTTDYEKQEQEVPGLQSEMTPAPDCGETSYQGHQRLQGYKILVTGGDSAIGRAAAIAYAKEGADVAINYL PSEEQDAQEVRQVIEESGQKAVLIPGDIRDEQFNYDLVEQAYQQLGGLDNVTLVAGHQQYHDDIHGFTTEAFTETFETNV YPLFWTVQKALEYLKPGASITTTSSVQGYNPSPILHDYAASKAAIISLTKSFSEELGPKGIRVNCVAPGPFWSPLQISGG QPQSKIPTFGQKTPLGRAGQPVELCGTYVLLASEESSYTTGQVFGVSGGVQID
Sequences:
>Translated_293_residues MAAQDPRTKFKTTDYEKQEQEVPGLQSEMTPAPDCGETSYQGHQRLQGYKILVTGGDSAIGRAAAIAYAKEGADVAINYL PSEEQDAQEVRQVIEESGQKAVLIPGDIRDEQFNYDLVEQAYQQLGGLDNVTLVAGHQQYHDDIHGFTTEAFTETFETNV YPLFWTVQKALEYLKPGASITTTSSVQGYNPSPILHDYAASKAAIISLTKSFSEELGPKGIRVNCVAPGPFWSPLQISGG QPQSKIPTFGQKTPLGRAGQPVELCGTYVLLASEESSYTTGQVFGVSGGVQID >Mature_292_residues AAQDPRTKFKTTDYEKQEQEVPGLQSEMTPAPDCGETSYQGHQRLQGYKILVTGGDSAIGRAAAIAYAKEGADVAINYLP SEEQDAQEVRQVIEESGQKAVLIPGDIRDEQFNYDLVEQAYQQLGGLDNVTLVAGHQQYHDDIHGFTTEAFTETFETNVY PLFWTVQKALEYLKPGASITTTSSVQGYNPSPILHDYAASKAAIISLTKSFSEELGPKGIRVNCVAPGPFWSPLQISGGQ PQSKIPTFGQKTPLGRAGQPVELCGTYVLLASEESSYTTGQVFGVSGGVQID
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=240, Percent_Identity=29.1666666666667, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=30.4182509505703, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=28.8702928870293, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=29.8701298701299, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=28.4046692607004, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI33667109, Length=180, Percent_Identity=31.1111111111111, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=26.6129032258064, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=26.7489711934156, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=25.7936507936508, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI32455239, Length=193, Percent_Identity=31.6062176165803, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI5031765, Length=193, Percent_Identity=31.6062176165803, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=29.6442687747036, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=30.078125, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=24.3346007604563, Blast_Score=68, Evalue=8e-12, Organism=Escherichia coli, GI1789378, Length=286, Percent_Identity=59.7902097902098, Blast_Score=352, Evalue=2e-98, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=35.6275303643725, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=30.6451612903226, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=26.9076305220884, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=25.2066115702479, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=27.5303643724696, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=28.2442748091603, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=30.5220883534137, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=29.4354838709677, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=25.4032258064516, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=27.6264591439689, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787545, Length=253, Percent_Identity=24.901185770751, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=33.0798479087452, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=29.5546558704453, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=30.5343511450382, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=31.8007662835249, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=28.3464566929134, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=30.0380228136882, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=28.2258064516129, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=29.8850574712644, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=28.6259541984733, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=30.0380228136882, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=27.2388059701493, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=27.6515151515151, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=27.4436090225564, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=26.9961977186312, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=27.6679841897233, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=25.1937984496124, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17559104, Length=254, Percent_Identity=27.1653543307087, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=26.8292682926829, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=26.7441860465116, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=25.1968503937008, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17555706, Length=256, Percent_Identity=28.125, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=23.9837398373984, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=27.6752767527675, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=26.984126984127, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=26.2172284644195, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=223, Percent_Identity=26.0089686098655, Blast_Score=66, Evalue=7e-12, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=30.6772908366534, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=28.968253968254, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=31.3008130081301, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=30.327868852459, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24639444, Length=259, Percent_Identity=30.5019305019305, Blast_Score=88, Evalue=8e-18, Organism=Drosophila melanogaster, GI24644337, Length=147, Percent_Identity=38.7755102040816, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=27.3092369477912, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=28.1853281853282, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=29.5275590551181, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31735; Mature: 31603
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAQDPRTKFKTTDYEKQEQEVPGLQSEMTPAPDCGETSYQGHQRLQGYKILVTGGDSAI CCCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHCCCEEEEEECCCCHH GRAAAIAYAKEGADVAINYLPSEEQDAQEVRQVIEESGQKAVLIPGDIRDEQFNYDLVEQ HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHH AYQQLGGLDNVTLVAGHQQYHDDIHGFTTEAFTETFETNVYPLFWTVQKALEYLKPGASI HHHHHCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCE TTTSSVQGYNPSPILHDYAASKAAIISLTKSFSEELGPKGIRVNCVAPGPFWSPLQISGG EEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCC QPQSKIPTFGQKTPLGRAGQPVELCGTYVLLASEESSYTTGQVFGVSGGVQID CCCCCCCCCCCCCCCCCCCCCHHHHCEEEEEECCCCCCCCCEEEECCCCCEEC >Mature Secondary Structure AAQDPRTKFKTTDYEKQEQEVPGLQSEMTPAPDCGETSYQGHQRLQGYKILVTGGDSAI CCCCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHCCCEEEEEECCCCHH GRAAAIAYAKEGADVAINYLPSEEQDAQEVRQVIEESGQKAVLIPGDIRDEQFNYDLVEQ HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHH AYQQLGGLDNVTLVAGHQQYHDDIHGFTTEAFTETFETNVYPLFWTVQKALEYLKPGASI HHHHHCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCE TTTSSVQGYNPSPILHDYAASKAAIISLTKSFSEELGPKGIRVNCVAPGPFWSPLQISGG EEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCC QPQSKIPTFGQKTPLGRAGQPVELCGTYVLLASEESSYTTGQVFGVSGGVQID CCCCCCCCCCCCCCCCCCCCCHHHHCEEEEEECCCCCCCCCEEEECCCCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 8196543 [H]