Click here to switch to the map view.

The map label for this gene is 57650693

Identifier: 57650693

GI number: 57650693

Start: 2064956

End: 2065828

Strand: Reverse

Name: 57650693

Synonym: SACOL2004

Alternate gene names: NA

Gene position: 2065828-2064956 (Counterclockwise)

Preceding gene: 57650694

Following gene: 57650689

Centisome position: 73.53

GC content: 30.58

Gene sequence:

>873_bases
ATGTATACACGTACAGCTACAACAAGTGATAGTCAAAAAAATATTACTCAAAGCTTACAATTTAATTTCTTAACTGAACC
TAATTATGATAAAGAAACAGTATTTATTAAAGCAAAAGGTACAATTGGTAGTGGTTTGAGAATTTTAGACCCAAATGGTT
ATTGGAATAGTACATTAAGATGGCCTGGATCTTATTCAGTTTCAATTCAAAATGTTGATGACAACAACAATACAAATGTG
ACTGACTTTGCACCAAAAAATCAGGATGAATCAAGAGAAGTTAAATATACGTATGGTTATAAAACAGGTGGAGATTTTTC
GATTAATCGTGGAGGCTTAACTGGAAATATTACAAAAGAGAGTAATTATTCAGAGACGATTAGTTATCAACAACCATCAT
ATCGTACATTACTTGATCAATCTACGTCACATAAAGGTGTAGGTTGGAAAGTAGAAGCACATTTGATAAATAATATGGGA
CATGACCATACGAGACAATTAACTAATGATAGTGATAATAGAACTAAAAGTGAAATTTTTTCTTTAACACGAAATGGAAA
TTTATGGGCGAAAGATAATTTCACACCTAAAGACAAAATGCCTGTAACTGTGTCTGAAGGGTTTAATCCAGAATTTTTAG
CTGTTATGTCACATGATAAAAAAGACAAAGGTAAATCACAATTTGTTGTTCATTATAAAAGATCAATGGATGAGTTTAAA
ATAGATTGGAATCGCCATGGTTTCTGGGGCTATTGGTCTGGTGAAAACCATGTAGATAAAAAAGAAGAAAAATTATCAGC
ATTATATGAAGTTGATTGGAAGACACATAATGTGAAGTTTGTAAAAGTACTTAATGATAATGAAAAGAAATAA

Upstream 100 bases:

>100_bases
ACTATCGACTACTTTCACTGTATTACCAGCTACTTCATTTGCAAAGATTAATTCTGAAATCAAACAAGTTTCTGAGAAGA
ATCTTGATGGTGATACTAAA

Downstream 100 bases:

>100_bases
GTAATAAAAGTTGCCTGCTACATAGAATGTAGTAGGTAACTTTTATTTATATTTGAATAGATAGATTTATTATGACGTGC
AGTGTATGAATCTTGTTTGA

Product: leukocidin subunit precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNV
TDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMG
HDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFK
IDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHNVKFVKVLNDNEKK

Sequences:

>Translated_290_residues
MYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNV
TDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMG
HDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFK
IDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHNVKFVKVLNDNEKK
>Mature_290_residues
MYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNV
TDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMG
HDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFK
IDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHNVKFVKVLNDNEKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aerolysin family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LUKL1_STAA3 (Q2FFA3)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_494625.1
- ProteinModelPortal:   Q2FFA3
- SMR:   Q2FFA3
- EnsemblBacteria:   EBSTAT00000038087
- GeneID:   3913314
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_1974
- GeneTree:   EBGT00050000023901
- HOGENOM:   HBG216024
- OMA:   VCKNITI
- ProtClustDB:   CLSK885717
- GO:   GO:0009405
- InterPro:   IPR003963
- InterPro:   IPR001340
- InterPro:   IPR016183
- PRINTS:   PR01468
- TIGRFAMs:   TIGR01002

Pfam domain/function: PF07968 Leukocidin; SSF56959 Leukocidin/Porin

EC number: NA

Molecular weight: Translated: 33445; Mature: 33445

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLR
CCCCCCCCCCCHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCEEE
WPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKE
CCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECC
SNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIF
CCCCCEEECCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCHHHHHH
SLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFK
EEECCCCEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCCEEE
IDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHNVKFVKVLNDNEKK
EECCCCCEEEEECCCCCCCHHHHHHHHEEEECCEECCEEEEEEECCCCCC
>Mature Secondary Structure
MYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLR
CCCCCCCCCCCHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCEEE
WPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKE
CCCCEEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECC
SNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIF
CCCCCEEECCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCHHHHHH
SLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFK
EEECCCCEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCCEEE
IDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHNVKFVKVLNDNEKK
EECCCCCEEEEECCCCCCCHHHHHHHHEEEECCEECCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA