Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is cycA [H]
Identifier: 57650567
GI number: 57650567
Start: 1778240
End: 1779601
Strand: Direct
Name: cycA [H]
Synonym: SACOL1743
Alternate gene names: 57650567
Gene position: 1778240-1779601 (Clockwise)
Preceding gene: 57650537
Following gene: 57652004
Centisome position: 63.3
GC content: 34.88
Gene sequence:
>1362_bases ATGGCTGAAAAATTACAAAGGGAACTGAGCAATCGCCACATACAATTAATTGCAATTGGCGGTGCAATTGGTACAGGCTT ATTCTTAGGTGCTGGTCAAACGATTGCATTAACCGGCCCTTCAATTCTATTAACATACATCATTATAGGATTTATGTTAT TTATGTTTATGCGAGGTTTAGGAGAAATCATTATACAGAATACTGAATTTAAATCTTTCGCAGATGTAACCAATACATAT ATTGGGCCTTTTGCAGGATTTGTTACCGGATGGACATACTGGTTCTGTTGGATTATTACAGGTATGGCTGAAGTAACGGC TGTGGCAAAATATGTTAGCTTTTGGTTCCCAGAAATTCCAAACTGGATAAGTGCACTATTTTGTGTACTGTTATTAATGT CATTCAACCTACTTAGCGCAAGACTTTTCGGAGAATTAGAATTTTGGTTCTCTATCATTAAAATAGCGACAATTATTGGT TTAATAGTAGTTGGTTTCGTCATGATTCTATTTGCATTTAAAACTCAATTCGGGCATGCCAGTTTCACAAATCTATATGA ACACGGCATATTCGCTAAAGGTGCTTCTGGATTCTTTATGTCTTTCCAAATGGCACTATTCTCATTTGTAGGAATTGAAA TGATTGGTGTTACAGCTGGGGAAACAAAAGATCCAGTTAAAACAATTCCAAAAGCAATTAACAGTGTACCCATTAGAATT TTAATATTTTACGTTGGGGCGTTAGCGGTTATCATGTCTATTATCCCTTGGCAGCAAGTTGATCCTGATAACAGTCCATT CGTAAAATTATTCGCATTGATCGGAATTCCGTTTGCTGCGGGCTTGATTAATTTTGTAGTATTAACCGCTGCTGCTTCAT CATGTAACAGTGGTATATTCTCAAATAGCCGTATGCTTTTCGGTTTATCAAGTCAACAACAAGCACCTCCGAACTTTTCT AAGACGAATAAATATGGCGTTCCACATGTTGCAATCTTTGCTTCATCAGCATTATTACTTGTGGCAGCATTACTAAACTA TATTTTCCCAGATGCGACAAAAGTATTTACGTATGTGACTACCATCTCTACAGTGTTATTTTTAGTTGTATGGGGTCTGA TTATCATTGCATATATCAATTATAGTCGTAAAAACCCAGATCTACATAAAAATGCTACGTACAAACTATTAGGTGGCAAA TATATGGGCTACTTAATATTTGTATTCTTCATTTTTGTGTTCGGGTTATTATTTATTAATGTTGATACAAGACGTGCAAT TTATTTTATTCCGATTTGGTTTATACTTTTAGCATTTATGTACTTAAGATATAAACGTATCGCTGCTAAATCAAATAAAT AA
Upstream 100 bases:
>100_bases GTATATTAACATGGAATTTTACACATTTTTACCGAAAATAATTGTATATATCTCAATATAAGTGCATAATAAACATATCT ATATTTAAGGGAGATGTATT
Downstream 100 bases:
>100_bases CAACAAGTTTTAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATC AGCTTTTTTGATATGTATTT
Product: amino acid permease
Products: D-glycine [Cytoplasm]; D-alanine [Cytoplasm]; Proton [Cytoplasm]; D-serine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTY IGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIG LIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFS KTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGK YMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
Sequences:
>Translated_453_residues MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTY IGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIG LIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFS KTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGK YMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK >Mature_452_residues AEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYI GPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGL IVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRIL IFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSK TNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKY MGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
Specific function: Permease that is involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine [H]
COG id: COG1113
COG function: function code E; Gamma-aminobutyrate permease and related permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Amino acid transporter (AAT) (TC 2.A.3.1) family [H]
Homologues:
Organism=Homo sapiens, GI110347453, Length=285, Percent_Identity=22.8070175438596, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1790653, Length=454, Percent_Identity=51.9823788546256, Blast_Score=493, Evalue=1e-141, Organism=Escherichia coli, GI48994972, Length=434, Percent_Identity=44.2396313364055, Blast_Score=359, Evalue=1e-100, Organism=Escherichia coli, GI1786602, Length=455, Percent_Identity=44.1758241758242, Blast_Score=352, Evalue=2e-98, Organism=Escherichia coli, GI1786302, Length=454, Percent_Identity=39.8678414096916, Blast_Score=344, Evalue=5e-96, Organism=Escherichia coli, GI1786789, Length=444, Percent_Identity=40.5405405405405, Blast_Score=343, Evalue=2e-95, Organism=Escherichia coli, GI87081915, Length=406, Percent_Identity=34.7290640394089, Blast_Score=266, Evalue=2e-72, Organism=Escherichia coli, GI87081708, Length=401, Percent_Identity=34.9127182044888, Blast_Score=249, Evalue=2e-67, Organism=Escherichia coli, GI1788480, Length=395, Percent_Identity=38.4810126582278, Blast_Score=241, Evalue=6e-65, Organism=Escherichia coli, GI1789017, Length=419, Percent_Identity=30.5489260143198, Blast_Score=208, Evalue=6e-55, Organism=Escherichia coli, GI2367353, Length=320, Percent_Identity=26.5625, Blast_Score=83, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17532491, Length=373, Percent_Identity=23.0563002680965, Blast_Score=75, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6320772, Length=398, Percent_Identity=33.9195979899498, Blast_Score=206, Evalue=5e-54, Organism=Saccharomyces cerevisiae, GI6324924, Length=469, Percent_Identity=31.5565031982942, Blast_Score=196, Evalue=5e-51, Organism=Saccharomyces cerevisiae, GI6324061, Length=399, Percent_Identity=30.3258145363409, Blast_Score=184, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6324990, Length=440, Percent_Identity=29.7727272727273, Blast_Score=166, Evalue=1e-41, Organism=Saccharomyces cerevisiae, GI6324553, Length=389, Percent_Identity=32.9048843187661, Blast_Score=164, Evalue=4e-41, Organism=Saccharomyces cerevisiae, GI6322892, Length=399, Percent_Identity=31.8295739348371, Blast_Score=162, Evalue=9e-41, Organism=Saccharomyces cerevisiae, GI6324059, Length=455, Percent_Identity=29.010989010989, Blast_Score=155, Evalue=9e-39, Organism=Saccharomyces cerevisiae, GI6321629, Length=399, Percent_Identity=28.5714285714286, Blast_Score=144, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6322967, Length=427, Percent_Identity=27.6346604215457, Blast_Score=141, Evalue=2e-34, Organism=Saccharomyces cerevisiae, GI6321053, Length=381, Percent_Identity=28.3464566929134, Blast_Score=137, Evalue=3e-33, Organism=Saccharomyces cerevisiae, GI6319608, Length=407, Percent_Identity=25.7985257985258, Blast_Score=136, Evalue=6e-33, Organism=Saccharomyces cerevisiae, GI6319824, Length=403, Percent_Identity=26.5508684863524, Blast_Score=135, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6319543, Length=434, Percent_Identity=26.036866359447, Blast_Score=128, Evalue=2e-30, Organism=Saccharomyces cerevisiae, GI6320717, Length=403, Percent_Identity=24.317617866005, Blast_Score=125, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6324981, Length=425, Percent_Identity=28.4705882352941, Blast_Score=125, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6319542, Length=397, Percent_Identity=24.1813602015113, Blast_Score=114, Evalue=4e-26, Organism=Saccharomyces cerevisiae, GI6320251, Length=396, Percent_Identity=23.4848484848485, Blast_Score=112, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6320364, Length=449, Percent_Identity=24.9443207126949, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 - InterPro: IPR004840 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 50482; Mature: 50351
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGL CCHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH GEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIP HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCHHHH LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIF HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVT CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH TISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFIN HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHC VDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGL CHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH GEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIP HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCHHHH LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIF HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVT CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH TISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFIN HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHC VDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-glycine [Periplasm]; D-alanine [Periplasm]; Proton [Periplasm]; D-serine [Periplasm] [C]
Specific reaction: Proton [Periplasm] + D-glycine [Periplasm] = Proton [Cytoplasm] + D-glycine [Cytoplasm] Proton [Periplasm] + D-alanine [Periplasm] = Proton [Cytoplasm] + D-alanine [Cytoplasm] Proton [Periplasm] + D-serine [Periplasm] = Proton [Cytoplasm] + D-serine [Cyto
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]