Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is dtd
Identifier: 57650514
GI number: 57650514
Start: 1717645
End: 1718097
Strand: Reverse
Name: dtd
Synonym: SACOL1688
Alternate gene names: 57650514
Gene position: 1718097-1717645 (Counterclockwise)
Preceding gene: 57650515
Following gene: 57650513
Centisome position: 61.15
GC content: 32.01
Gene sequence:
>453_bases ATGAAAGTAGTTGTACAAAGAGTTAAAGAAGCATCGGTGACGAATGATACATTAAATAATCAAATCAAAAAAGGATATTG TTTATTAGTCGGTATCGGTCAGAACTCTACAGAGCAAGATGCAGATGTAATTGCAAAGAAAATTGCTAATGCAAGATTAT TTGAAGATGACAATAATAAATTAAACTTTAATATCCAACAAATGAATGGTGAAATACTATCAGTTTCACAATTTACTCTC TATGCAGATGTAAAAAAAGGTAACCGTCCAGGTTTCTCAAATTCTAAAAATCCTGATCAAGCGGTAAAAATTTATGAGTA TTTTAATGATGCGCTACGAGCGTATGGTCTTACTGTGAAAACAGGTGAATTTGGAACACACATGAATGTTAGCATAAATA ATGATGGTCCAGTCACTATTATTTATGAAAGTCAGGACGGCAAAATTCAATGA
Upstream 100 bases:
>100_bases TGGTGAAAAACGTGAATGATGTTTATCGTGTGGTAGAAAAGATCAAACAACTTGGTGATGTTTATACAGTAACAAGAGTT TGGAACTAGAGGTGCAAAAT
Downstream 100 bases:
>100_bases AAAAAATAGAGGCATGGTTATCTAAAAAGGGTCTTAAAAATAAACGTACTCTAATAGTAGTGATTGCCTTTGTCTTATTT ATCATCTTTTTATTTTTATT
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 150; Mature: 150
Protein sequence:
>150_residues MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTL YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
Sequences:
>Translated_150_residues MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTL YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ >Mature_150_residues MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTL YADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm (Probable)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family
Homologues:
Organism=Homo sapiens, GI30795227, Length=148, Percent_Identity=42.5675675675676, Blast_Score=100, Evalue=8e-22, Organism=Escherichia coli, GI1790320, Length=144, Percent_Identity=39.5833333333333, Blast_Score=120, Evalue=5e-29, Organism=Caenorhabditis elegans, GI115533292, Length=150, Percent_Identity=40.6666666666667, Blast_Score=107, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6319982, Length=148, Percent_Identity=46.6216216216216, Blast_Score=120, Evalue=6e-29, Organism=Drosophila melanogaster, GI281361569, Length=151, Percent_Identity=43.046357615894, Blast_Score=114, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DTD_STAA1 (A7X347)
Other databases:
- EMBL: AP009324 - RefSeq: YP_001442210.1 - ProteinModelPortal: A7X347 - SMR: A7X347 - STRING: A7X347 - EnsemblBacteria: EBSTAT00000003869 - GeneID: 5560243 - GenomeReviews: AP009324_GR - KEGG: saw:SAHV_1620 - eggNOG: COG1490 - GeneTree: EBGT00050000024776 - HOGENOM: HBG286048 - OMA: MKAVIQR - ProtClustDB: PRK05273 - BioCyc: SAUR418127:SAHV_1620-MONOMER - GO: GO:0005737 - HAMAP: MF_00518 - InterPro: IPR003732 - Gene3D: G3DSA:3.50.80.10 - PANTHER: PTHR10472 - TIGRFAMs: TIGR00256
Pfam domain/function: PF02580 Tyr_Deacylase; SSF69500 DTyrtRNA_deacyls
EC number: NA
Molecular weight: Translated: 16697; Mature: 16697
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: ACT_SITE 79-79
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNK CHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCE LNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVK EEEEEEECCCEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE TGEFGTHMNVSINNDGPVTIIYESQDGKIQ CCCCCCEEEEEECCCCCEEEEEECCCCCCC >Mature Secondary Structure MKVVVQRVKEASVTNDTLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNK CHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCE LNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAYGLTVK EEEEEEECCCEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE TGEFGTHMNVSINNDGPVTIIYESQDGKIQ CCCCCCEEEEEECCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA