Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is yrrB [H]
Identifier: 57650502
GI number: 57650502
Start: 1704671
End: 1705339
Strand: Reverse
Name: yrrB [H]
Synonym: SACOL1675
Alternate gene names: 57650502
Gene position: 1705339-1704671 (Counterclockwise)
Preceding gene: 57650503
Following gene: 57650501
Centisome position: 60.7
GC content: 31.24
Gene sequence:
>669_bases ATGATAGATCAACAAACAATTTATCAATACATACAAAATGGAAAAATAGAAGAAGCGTTACAAGCATTGTTCGGAAATAT CGAAGAAAATCCTACAATTATTGAAAATTATATTAATGCTGGTATCGTACTTGCTGATGCGAATGAGATTGAAAAGGCAG AGCGTTTTTTCCAAAAAGCTTTAACAATAGATCCGAAGAATGGCGTCGTATTTTTTAATCTAGCAAATGTATATTATAAT CAGCAACGTTATCAAGAAGCTATTAAATTATATCAACAAGCATTACAAACAGAGATTGAACAAGTTGATTGTAATTATAT GATCGGTATGGCGTTTAATCAGTTAGAATCATTTAAGCTGGCATTGCCGTATTTAATGACTGCTGCGGAACTAGATAAAG ACAAAGATGCAGAAGTTCAATTTCAATATGGTCTTGTATTATGTCAATTAGAAATGTTTAATGAAGCCATAACTCAACTT AAACATGTATTAACGATTGATAAAAATCATGTTGATGCAAGATACAATTTGGGCTTAGCGTTATTTATGAAAAATGAAGA TATTGATGAAGCAATAACTCATTTTAAAGAAGCTGTGACTATCGACCCTAAACACTTATTAAGTCAGCATGCGCTGAAAA CATTCACTAAAATGAAAGAGGAGGAGTAA
Upstream 100 bases:
>100_bases TGAATGAAGATGATATTAGATTATATTTTATTCGTTGTTAAGTGATTCGAGACATACAATTTATCAAGATGTTATAATTG ATGAGAAATGAGGTTCGTAA
Downstream 100 bases:
>100_bases CATGTCAGACCCTACACTATTTGATTATTCAATGATCAAAGGTACTGTTGAAGCGATATTGTTTCAAAACAGTGATAATT TTTATACAGTGCTTAAAGTA
Product: TPR domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MIDQQTIYQYIQNGKIEEALQALFGNIEENPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFFNLANVYYN QQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQL KHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
Sequences:
>Translated_222_residues MIDQQTIYQYIQNGKIEEALQALFGNIEENPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFFNLANVYYN QQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQL KHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE >Mature_222_residues MIDQQTIYQYIQNGKIEEALQALFGNIEENPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFFNLANVYYN QQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQL KHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 6 TPR repeats [H]
Homologues:
Organism=Caenorhabditis elegans, GI115532692, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115532690, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 25702; Mature: 25702
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDQQTIYQYIQNGKIEEALQALFGNIEENPTIIENYINAGIVLADANEIEKAERFFQKA CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHH LTIDPKNGVVFFNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKL HCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHH ALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLA HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEE LFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE EEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MIDQQTIYQYIQNGKIEEALQALFGNIEENPTIIENYINAGIVLADANEIEKAERFFQKA CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHH LTIDPKNGVVFFNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKL HCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHH ALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLA HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEE LFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE EEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]