Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is yqgF [C]
Identifier: 57650498
GI number: 57650498
Start: 1698464
End: 1698892
Strand: Reverse
Name: yqgF [C]
Synonym: SACOL1671
Alternate gene names: 57650498
Gene position: 1698892-1698464 (Counterclockwise)
Preceding gene: 57650499
Following gene: 57650497
Centisome position: 60.47
GC content: 32.87
Gene sequence:
>429_bases ATGTTACAACATAAAATTTTAGGACTCGATGTCGGTAGTAGAACGGTAGGAATTGCAATTAGTGATATAATGGGTTGGAC GGCACAAGGATTAGACACACTCCGAATCAATGAAGAAAATAATGAATTAGGTATTGACCAATTAGTAGACATTATTAAAA AACATAATGTGGGTACAGTCGTAATAGGACTACCTAAAAACATGAATAATTCAATAGGATTTCGAGGCGAAGCTTCGTTA ACATATAAAGAAAAATTATTAGAAGCTTATCCTTCTATTGAGATTGTGATGTGGGATGAAAGATTAAGCACAATGGCTGC TGAACGATCATTATTAGAAGCAGATGTTTCAAGACAAAAAAGAAAACAAGTGATTGATAAAATGGCAGCGGTATTTATTT TACAAGGCTATTTAGATTCACTACATTAA
Upstream 100 bases:
>100_bases ACGCCAAAATGAAGCAAGAAATCAAATTCGTCATATTGATAGAGATGTTATTATGGAAGAGCTTGTTTCTTACTATTTAA AAGAGCAAAATAAATAATTT
Downstream 100 bases:
>100_bases AAGGAGATTTTACTATGACTGAACATAATCATGATTCACAACTAGAAATTAATAACGAAGAAGAATTATTAACTTTATTC GATGAAGAGGGAAATGAAGT
Product: Holliday junction resolvase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASL TYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
Sequences:
>Translated_142_residues MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASL TYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH >Mature_142_residues MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASL TYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination
COG id: COG0816
COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yqgF HJR family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RUVX_STAA2 (A6U285)
Other databases:
- EMBL: CP000736 - RefSeq: YP_001316840.1 - ProteinModelPortal: A6U285 - SMR: A6U285 - STRING: A6U285 - EnsemblBacteria: EBSTAT00000014659 - GeneID: 5315690 - GenomeReviews: CP000736_GR - KEGG: sah:SaurJH1_1707 - eggNOG: COG0816 - GeneTree: EBGT00050000023873 - HOGENOM: HBG607919 - OMA: VLILQNY - ProtClustDB: PRK00109 - BioCyc: SAUR359787:SAURJH1_1707-MONOMER - GO: GO:0005737 - HAMAP: MF_00651 - InterPro: IPR005227 - InterPro: IPR006641 - InterPro: IPR012337 - Gene3D: G3DSA:3.30.420.140 - SMART: SM00732 - TIGRFAMs: TIGR00250
Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold
EC number: NA
Molecular weight: Translated: 15866; Mature: 15866
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTV CCCCEEEEECCCCCEEHEEHHHHHCHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEE VIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQK EEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH RKQVIDKMAAVFILQGYLDSLH HHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTV CCCCEEEEECCCCCEEHEEHHHHHCHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEE VIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQK EEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH RKQVIDKMAAVFILQGYLDSLH HHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA