Definition Staphylococcus aureus subsp. aureus COL chromosome, complete genome.
Accession NC_002951
Length 2,809,422

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The map label for this gene is yqgF [C]

Identifier: 57650498

GI number: 57650498

Start: 1698464

End: 1698892

Strand: Reverse

Name: yqgF [C]

Synonym: SACOL1671

Alternate gene names: 57650498

Gene position: 1698892-1698464 (Counterclockwise)

Preceding gene: 57650499

Following gene: 57650497

Centisome position: 60.47

GC content: 32.87

Gene sequence:

>429_bases
ATGTTACAACATAAAATTTTAGGACTCGATGTCGGTAGTAGAACGGTAGGAATTGCAATTAGTGATATAATGGGTTGGAC
GGCACAAGGATTAGACACACTCCGAATCAATGAAGAAAATAATGAATTAGGTATTGACCAATTAGTAGACATTATTAAAA
AACATAATGTGGGTACAGTCGTAATAGGACTACCTAAAAACATGAATAATTCAATAGGATTTCGAGGCGAAGCTTCGTTA
ACATATAAAGAAAAATTATTAGAAGCTTATCCTTCTATTGAGATTGTGATGTGGGATGAAAGATTAAGCACAATGGCTGC
TGAACGATCATTATTAGAAGCAGATGTTTCAAGACAAAAAAGAAAACAAGTGATTGATAAAATGGCAGCGGTATTTATTT
TACAAGGCTATTTAGATTCACTACATTAA

Upstream 100 bases:

>100_bases
ACGCCAAAATGAAGCAAGAAATCAAATTCGTCATATTGATAGAGATGTTATTATGGAAGAGCTTGTTTCTTACTATTTAA
AAGAGCAAAATAAATAATTT

Downstream 100 bases:

>100_bases
AAGGAGATTTTACTATGACTGAACATAATCATGATTCACAACTAGAAATTAATAACGAAGAAGAATTATTAACTTTATTC
GATGAAGAGGGAAATGAAGT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASL
TYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH

Sequences:

>Translated_142_residues
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASL
TYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
>Mature_142_residues
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASL
TYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_STAA2 (A6U285)

Other databases:

- EMBL:   CP000736
- RefSeq:   YP_001316840.1
- ProteinModelPortal:   A6U285
- SMR:   A6U285
- STRING:   A6U285
- EnsemblBacteria:   EBSTAT00000014659
- GeneID:   5315690
- GenomeReviews:   CP000736_GR
- KEGG:   sah:SaurJH1_1707
- eggNOG:   COG0816
- GeneTree:   EBGT00050000023873
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   SAUR359787:SAURJH1_1707-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15866; Mature: 15866

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTV
CCCCEEEEECCCCCEEHEEHHHHHCHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEE
VIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQK
EEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
RKQVIDKMAAVFILQGYLDSLH
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTV
CCCCEEEEECCCCCEEHEEHHHHHCHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEE
VIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQK
EEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
RKQVIDKMAAVFILQGYLDSLH
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA