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The map label for this gene is yabJ [H]

Identifier: 57650037

GI number: 57650037

Start: 548804

End: 549184

Strand: Direct

Name: yabJ [H]

Synonym: SACOL0540

Alternate gene names: 57650037

Gene position: 548804-549184 (Clockwise)

Preceding gene: 57651378

Following gene: 57650038

Centisome position: 19.53

GC content: 34.12

Gene sequence:

>381_bases
ATGAAAATCATTAACACAACAAGATTACCGGAAGCACTTGGACCATATTCGCATGCAACAGTTGTGAATGGTATGGTTTA
TACTTCTGGTCAGATTCCATTGAATATTGATGGACATATCGTAAGCGCTGATGTTCAAGCACAGACAAAACAAGTTTTAG
AAAATTTAAAGGTTGTTTTGGAAGAAGCAGGATCTGATTTGAATTCTGTTGCGAAAGCGACCATTTTCATTAAAGATATG
AATGATTTCCAAAAAATAAATGAAGTGTATGGTCAATATTTTAATGAACACAAGCCAGCGCGTAGTTGTGTAGAGGTTGC
GCGTTTGCCAAAAGATGTGAAAGTAGAAATTGAATTAGTAAGTAAAATTAAGGAATTATAA

Upstream 100 bases:

>100_bases
TCCTTAGTGAAATTATCTGATGTAGATGAATATAATCAAGAGTTTAACGTAGAACCTGGCAACAGTTTATCTAAGTTTTC
ATAAAAGGAGTTTTAGTATT

Downstream 100 bases:

>100_bases
TTTTCGATTAATATGTTTAATCAAGCTTCTAAATAAAACAGAGAGATATATACTATAGGGGGGCTCACTACATGAAAGTG
ACAGATGTAAGACTTAGAAA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNIDGHIVSADVQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDM
NDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELVSKIKEL

Sequences:

>Translated_126_residues
MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNIDGHIVSADVQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDM
NDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELVSKIKEL
>Mature_126_residues
MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNIDGHIVSADVQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDM
NDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELVSKIKEL

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=42.9752066115703, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=51.219512195122, Blast_Score=130, Evalue=4e-32,
Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=49.5934959349593, Blast_Score=128, Evalue=1e-31,
Organism=Escherichia coli, GI1787245, Length=114, Percent_Identity=35.0877192982456, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=32.4561403508772, Blast_Score=62, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=41.6, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=41.6, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=41.6, Blast_Score=100, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=40.6779661016949, Blast_Score=106, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=46, Blast_Score=102, Evalue=2e-23,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=42.9752066115703, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13996; Mature: 13996

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNIDGHIVSADVQAQTKQVLENLKVVL
CCCCCCCCCCHHHCCCCHHHHHCCEEEECCCCEEECCCEEEECCHHHHHHHHHHHHHHHH
EEAGSDLNSVAKATIFIKDMNDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELV
HHHCCCHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHH
SKIKEL
HHHHCC
>Mature Secondary Structure
MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNIDGHIVSADVQAQTKQVLENLKVVL
CCCCCCCCCCHHHCCCCHHHHHCCEEEECCCCEEECCCEEEECCHHHHHHHHHHHHHHHH
EEAGSDLNSVAKATIFIKDMNDFQKINEVYGQYFNEHKPARSCVEVARLPKDVKVEIELV
HHHCCCHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHH
SKIKEL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]