Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
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Accession | NC_002944 |
Length | 4,829,781 |
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The map label for this gene is 41409986
Identifier: 41409986
GI number: 41409986
Start: 4350255
End: 4351637
Strand: Reverse
Name: 41409986
Synonym: MAP3888c
Alternate gene names: NA
Gene position: 4351637-4350255 (Counterclockwise)
Preceding gene: 41409991
Following gene: 41409985
Centisome position: 90.1
GC content: 71.95
Gene sequence:
>1383_bases GTGGAACCTCAAGAAAATCGCAAGAACCCTCAGCGAATTTTCAGCTGCACACCGCACAGTTATTCCATGGCGGGGCAGTC CACCCTGTGGGTCGGCACGGCGCGCATGCTGCGCCGGGCCGGTTTCGGCGTGACCGGCCCCGAGGTCGACGCCGCCGTCG CCCGCGGCTGGCCCGGCCACCTGGACGCGATGCTGGCCGCCGATCCCGACGCCGACCCCGGCGCGCTGGCCACCCCGATG CCCGCCCTGCCGGCGCCCCAGCCGCCCGGCAAACGCGCCACCCCCGCGGCCCGCAAGCAGTACAACCAGCAGCTCACCGA ACAGCAGGGCGTGCTGTCGGATTGGTGGATCCGCCGCATGGTCGTCGTGCGCCAACCGTTCCACGAGAAGCTGACCTTGT TGTGGCACAACCACTTTGCCACCTCGGCGCAGAAGGTGCGGGTGGCGGCGCAGATGGCCGCGCAGAACCAGAAGCTGCGC ACGCTGTCGCTGGGCGATTTCCGCACCCTGGCCTACGCCATGCTGACCGACGCCGCCATGCTGCGCTGGCTGGACGGGCA GACCAGCACCGCCAAGGCGCCCAACGAAAACCTGGCCCGCGAATTCATGGAGCTGTTCGCGCTGGGCCACGGCAACGGCT ATACCGAGAGCGACGTCCGCAACGGGGCACGCGCCCTGACCGGCTGGGTCATCGGCGCCGGCGGCGCGACGTCGGTGCTG CCCAAACGCCATGACGCGACGGCCAAGACGCTGTTCGGCCGCAGCGCGAACTTCGATGCCGCCGGGTTCTGCGACGCGGT GCTCGCCCAGCCGAAATCGGCCGGGTACGTGGCGGGGCGGCTGTGGCAGCAGTTGGCCGGCGACGACCCGCCGTCGCCGC CCGCGCTCGACCGGCTGGTCGCCGCCTACGGCCCCGGCCGCGACCTGCGCGCCCTGACCCGGGCCATCCTCACCGACCCG GAGTTCACCGGCGCCCGGGCCAGCATGGTCAACACCCCGATCGAATGGCTGATCGGCGTGATCCGCTCGCTGCGGGTGCC CGTCGATGATCCCAAGCGACTCAAGATGATCGACGCGACGTTGCGCACGCTGGGGCAGCGGCCGTTCTATCCGCCCAGCG TCGGCGGCTGGCCCAGCGGGCAGGTCTGGCTGTCCACCGCCAGCGCCGGGGCCCGGCTGCGCGCCGCGACCGAGCTGGCG CACGCCGGCGACCTGTCCGGCATCGAGAACACCCCGCCCACCGACCGCATCGACGCGGTCGGCTACCTGATCGGCGTCGG CGCCTGGTCCGACCGCACCGCCCGCGCGCTGCAACCCCTGGTGGGCCAACCGCCCCGGCTGGTCGCCGCGGCCGTCAACA CCCCGGAGTACCTGACGTCATGA
Upstream 100 bases:
>100_bases CTAAACGGAACTCCGGTTCCGTGAACCGGCCCTCGGTCACTGTACAGCACGCGAACGGCGGCCGCGCGGCAGCGTCGGAT CGCGCCGCATCGCGCCGCCC
Downstream 100 bases:
>100_bases CCGAGATGAACCGTCGCAGATTCCTGATCGCCAGCGCGGGCGTGTCGGCGGCCGGGCTGCTGTCGTCGGCGGTGGCGGTC GGTTGGCCCGACCTGATGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MEPQENRKNPQRIFSCTPHSYSMAGQSTLWVGTARMLRRAGFGVTGPEVDAAVARGWPGHLDAMLAADPDADPGALATPM PALPAPQPPGKRATPAARKQYNQQLTEQQGVLSDWWIRRMVVVRQPFHEKLTLLWHNHFATSAQKVRVAAQMAAQNQKLR TLSLGDFRTLAYAMLTDAAMLRWLDGQTSTAKAPNENLAREFMELFALGHGNGYTESDVRNGARALTGWVIGAGGATSVL PKRHDATAKTLFGRSANFDAAGFCDAVLAQPKSAGYVAGRLWQQLAGDDPPSPPALDRLVAAYGPGRDLRALTRAILTDP EFTGARASMVNTPIEWLIGVIRSLRVPVDDPKRLKMIDATLRTLGQRPFYPPSVGGWPSGQVWLSTASAGARLRAATELA HAGDLSGIENTPPTDRIDAVGYLIGVGAWSDRTARALQPLVGQPPRLVAAAVNTPEYLTS
Sequences:
>Translated_460_residues MEPQENRKNPQRIFSCTPHSYSMAGQSTLWVGTARMLRRAGFGVTGPEVDAAVARGWPGHLDAMLAADPDADPGALATPM PALPAPQPPGKRATPAARKQYNQQLTEQQGVLSDWWIRRMVVVRQPFHEKLTLLWHNHFATSAQKVRVAAQMAAQNQKLR TLSLGDFRTLAYAMLTDAAMLRWLDGQTSTAKAPNENLAREFMELFALGHGNGYTESDVRNGARALTGWVIGAGGATSVL PKRHDATAKTLFGRSANFDAAGFCDAVLAQPKSAGYVAGRLWQQLAGDDPPSPPALDRLVAAYGPGRDLRALTRAILTDP EFTGARASMVNTPIEWLIGVIRSLRVPVDDPKRLKMIDATLRTLGQRPFYPPSVGGWPSGQVWLSTASAGARLRAATELA HAGDLSGIENTPPTDRIDAVGYLIGVGAWSDRTARALQPLVGQPPRLVAAAVNTPEYLTS >Mature_460_residues MEPQENRKNPQRIFSCTPHSYSMAGQSTLWVGTARMLRRAGFGVTGPEVDAAVARGWPGHLDAMLAADPDADPGALATPM PALPAPQPPGKRATPAARKQYNQQLTEQQGVLSDWWIRRMVVVRQPFHEKLTLLWHNHFATSAQKVRVAAQMAAQNQKLR TLSLGDFRTLAYAMLTDAAMLRWLDGQTSTAKAPNENLAREFMELFALGHGNGYTESDVRNGARALTGWVIGAGGATSVL PKRHDATAKTLFGRSANFDAAGFCDAVLAQPKSAGYVAGRLWQQLAGDDPPSPPALDRLVAAYGPGRDLRALTRAILTDP EFTGARASMVNTPIEWLIGVIRSLRVPVDDPKRLKMIDATLRTLGQRPFYPPSVGGWPSGQVWLSTASAGARLRAATELA HAGDLSGIENTPPTDRIDAVGYLIGVGAWSDRTARALQPLVGQPPRLVAAAVNTPEYLTS
Specific function: Unknown
COG id: COG5267
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49585; Mature: 49585
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPQENRKNPQRIFSCTPHSYSMAGQSTLWVGTARMLRRAGFGVTGPEVDAAVARGWPGH CCCCCCCCCHHHEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCH LDAMLAADPDADPGALATPMPALPAPQPPGKRATPAARKQYNQQLTEQQGVLSDWWIRRM HHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH VVVRQPFHEKLTLLWHNHFATSAQKVRVAAQMAAQNQKLRTLSLGDFRTLAYAMLTDAAM HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH LRWLDGQTSTAKAPNENLAREFMELFALGHGNGYTESDVRNGARALTGWVIGAGGATSVL HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCC PKRHDATAKTLFGRSANFDAAGFCDAVLAQPKSAGYVAGRLWQQLAGDDPPSPPALDRLV CCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH AAYGPGRDLRALTRAILTDPEFTGARASMVNTPIEWLIGVIRSLRVPVDDPKRLKMIDAT HHCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH LRTLGQRPFYPPSVGGWPSGQVWLSTASAGARLRAATELAHAGDLSGIENTPPTDRIDAV HHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH GYLIGVGAWSDRTARALQPLVGQPPRLVAAAVNTPEYLTS HHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHCC >Mature Secondary Structure MEPQENRKNPQRIFSCTPHSYSMAGQSTLWVGTARMLRRAGFGVTGPEVDAAVARGWPGH CCCCCCCCCHHHEEEECCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCH LDAMLAADPDADPGALATPMPALPAPQPPGKRATPAARKQYNQQLTEQQGVLSDWWIRRM HHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH VVVRQPFHEKLTLLWHNHFATSAQKVRVAAQMAAQNQKLRTLSLGDFRTLAYAMLTDAAM HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH LRWLDGQTSTAKAPNENLAREFMELFALGHGNGYTESDVRNGARALTGWVIGAGGATSVL HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCC PKRHDATAKTLFGRSANFDAAGFCDAVLAQPKSAGYVAGRLWQQLAGDDPPSPPALDRLV CCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH AAYGPGRDLRALTRAILTDPEFTGARASMVNTPIEWLIGVIRSLRVPVDDPKRLKMIDAT HHCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH LRTLGQRPFYPPSVGGWPSGQVWLSTASAGARLRAATELAHAGDLSGIENTPPTDRIDAV HHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH GYLIGVGAWSDRTARALQPLVGQPPRLVAAAVNTPEYLTS HHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA