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The map label for this gene is 41409910

Identifier: 41409910

GI number: 41409910

Start: 4259606

End: 4260421

Strand: Reverse

Name: 41409910

Synonym: MAP3812c

Alternate gene names: NA

Gene position: 4260421-4259606 (Counterclockwise)

Preceding gene: 41409912

Following gene: 41409908

Centisome position: 88.21

GC content: 66.91

Gene sequence:

>816_bases
ATGCGGACGGGTGTTCGGTGTGTTCTTGCGACGGTCGGCGTCGCTGCGTGTGTGGTGGTGACGCCGGCCGGCGTCAGCCT
GGCCGCTGCGACCCAGTCGCACGCGTTCGCGATCGCGTCGGTGCTGCCCAGCAGCGGCGAGATGGTCGGCGTGGCGCACC
CCGTGGTCGTGACGTTCCGCGCGCCCATCACCGATCCGGCCAAGCGACACGCGGCCGAACAGACCATTGACGTCAAATCG
ACACCCGCGATGAGCGGCAAGTTCGAATGGCTCGACAACCGTGTCGTGCAATGGGTTCCGGACCGGTACTGGCCCGCGCA
CAGCACGATTGCGCTGACCGTCGGCGGGGTTTCCACCGAGATCAAGACGGGTCCCGCGGTCATCGGGGTGGCCAGCATCT
CCGAACACACCTTCACCGTGAGCATCGACGGCGTCGAAGCCGGTCCGCCGACCTCGCTGCCGGCGCCGCACCACCGGCCC
CACTTCGGTGAGCAGGGGGTGATGCCGGCCTCGATGGGCAGGCCGGAATTCCCGACGCCGGTGGGCTCGTACACCGTCCT
GTCGAAAGAGCGTGCGGTGACGATGGATTCGAGCAGCGTCGGAATTCCCGTCGACGATCCCGACGGATACCTGCTGACCG
TCAACTACGCCGTCCGCATCACCAACCGCGGCCTGTTCGTGCATTCGGCGCCGTGGGCGGTCCGCTCACTGGGGCTGGAA
AACGTCAGCCACGGGTGCATCAGCCTGAGTCCCGACGACGCCGAATGGTACTACGACCACGTCAACGTCGGCGACCCGGT
GATCGTCCAAGACTAA

Upstream 100 bases:

>100_bases
CCGATGCGTGGCCAAATATCAACGCGCCCTTGCGCTTCCGCAGGTCATCGCCCATTTACGATCCCTATTGCAACTATGTC
AGTTAAAAGGAATTGGGGCC

Downstream 100 bases:

>100_bases
CGACGGCCGGCCGTAACCAACCGCAGCACAATGTAATTCGCGGGGCACACCGCGTCACCCAGGCGGCGTCCCGGCACCTG
GAACAGGAAATACCCACTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MRTGVRCVLATVGVAACVVVTPAGVSLAAATQSHAFAIASVLPSSGEMVGVAHPVVVTFRAPITDPAKRHAAEQTIDVKS
TPAMSGKFEWLDNRVVQWVPDRYWPAHSTIALTVGGVSTEIKTGPAVIGVASISEHTFTVSIDGVEAGPPTSLPAPHHRP
HFGEQGVMPASMGRPEFPTPVGSYTVLSKERAVTMDSSSVGIPVDDPDGYLLTVNYAVRITNRGLFVHSAPWAVRSLGLE
NVSHGCISLSPDDAEWYYDHVNVGDPVIVQD

Sequences:

>Translated_271_residues
MRTGVRCVLATVGVAACVVVTPAGVSLAAATQSHAFAIASVLPSSGEMVGVAHPVVVTFRAPITDPAKRHAAEQTIDVKS
TPAMSGKFEWLDNRVVQWVPDRYWPAHSTIALTVGGVSTEIKTGPAVIGVASISEHTFTVSIDGVEAGPPTSLPAPHHRP
HFGEQGVMPASMGRPEFPTPVGSYTVLSKERAVTMDSSSVGIPVDDPDGYLLTVNYAVRITNRGLFVHSAPWAVRSLGLE
NVSHGCISLSPDDAEWYYDHVNVGDPVIVQD
>Mature_271_residues
MRTGVRCVLATVGVAACVVVTPAGVSLAAATQSHAFAIASVLPSSGEMVGVAHPVVVTFRAPITDPAKRHAAEQTIDVKS
TPAMSGKFEWLDNRVVQWVPDRYWPAHSTIALTVGGVSTEIKTGPAVIGVASISEHTFTVSIDGVEAGPPTSLPAPHHRP
HFGEQGVMPASMGRPEFPTPVGSYTVLSKERAVTMDSSSVGIPVDDPDGYLLTVNYAVRITNRGLFVHSAPWAVRSLGLE
NVSHGCISLSPDDAEWYYDHVNVGDPVIVQD

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 28608; Mature: 28608

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTGVRCVLATVGVAACVVVTPAGVSLAAATQSHAFAIASVLPSSGEMVGVAHPVVVTFR
CCCCHHHHHHHHHHHEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEEECEEEEEEE
APITDPAKRHAAEQTIDVKSTPAMSGKFEWLDNRVVQWVPDRYWPAHSTIALTVGGVSTE
CCCCCHHHHHHHHHEEECCCCCCCCCEEEHHCCCCEEECCCCCCCCCCEEEEEECCCEEE
IKTGPAVIGVASISEHTFTVSIDGVEAGPPTSLPAPHHRPHFGEQGVMPASMGRPEFPTP
ECCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VGSYTVLSKERAVTMDSSSVGIPVDDPDGYLLTVNYAVRITNRGLFVHSAPWAVRSLGLE
CCCEEEEECCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEECCCHHHHHCCCC
NVSHGCISLSPDDAEWYYDHVNVGDPVIVQD
CCCCCEEEECCCCCCEEEEECCCCCEEEEEC
>Mature Secondary Structure
MRTGVRCVLATVGVAACVVVTPAGVSLAAATQSHAFAIASVLPSSGEMVGVAHPVVVTFR
CCCCHHHHHHHHHHHEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEEECEEEEEEE
APITDPAKRHAAEQTIDVKSTPAMSGKFEWLDNRVVQWVPDRYWPAHSTIALTVGGVSTE
CCCCCHHHHHHHHHEEECCCCCCCCCEEEHHCCCCEEECCCCCCCCCCEEEEEECCCEEE
IKTGPAVIGVASISEHTFTVSIDGVEAGPPTSLPAPHHRPHFGEQGVMPASMGRPEFPTP
ECCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VGSYTVLSKERAVTMDSSSVGIPVDDPDGYLLTVNYAVRITNRGLFVHSAPWAVRSLGLE
CCCEEEEECCEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEECCCHHHHHCCCC
NVSHGCISLSPDDAEWYYDHVNVGDPVIVQD
CCCCCEEEECCCCCCEEEEECCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]