| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is fadB_1
Identifier: 41406888
GI number: 41406888
Start: 810274
End: 812421
Strand: Direct
Name: fadB_1
Synonym: MAP0790
Alternate gene names: 41406888
Gene position: 810274-812421 (Clockwise)
Preceding gene: 41406887
Following gene: 41406892
Centisome position: 16.78
GC content: 66.53
Gene sequence:
>2148_bases ATGGCAGAGAACACCATCAAGTGGGACAAGGACGCCGACGGCATTGTCACGCTGACGCTCGACGACCCGACCGGGTCGGC CAACGTGATGAACGAGCACTACAAGGAATCGATGCACAACGCCGTCGAACGCCTTGTGGCAGAGAAGGATTCGATCACCG GTGTGGTGATCACCAGCGCCAAAAAGACGTTCTTCGCCGGCGGTGACCTCAAGAGCATGATCAACCTCGGCCCGGAGAAC GCCGGTGAGGCGTTCGACACCGTCGAGGCCGTCAAGCGCGACCTGCGCGCGCTGGAGACGCTCGGCAAGCCGGTGGTGGC CGCCATCAACGGCGCGGCGCTGGGCGGCGGGCTGGAGATCGCGCTGGCCTGTCACCACCGGATCGCCGCGGACATCAAGG GGCTGGTCGTCGGCCTGCCCGAGGTGACCCTGGGCCTGCTGCCCGGCGGCGGCGGGGTGACCCGCACCGTGCGGATGTTC GGCATCCAGAACGCGTTCATGAACATCCTGAGCCAGGGCACCCGGTTCAAGCCGGACAAGGCCAAGGAGATCGGCCTGGT CGACGAGCTGGTCGGCAGCGTCGAGGAACTGGTGCCCGCCGCCAAGGCGTGGATCAAGGCCAACCCCGACGCCCACGAAC AGCCTTGGGACAAAAAGGGTTACAAGATGCCTGGCGGCACCCCGTCCAGCCCCGCGCTGGCCGGCATCCTGCCGTCGTTT CCGGCGCTGCTCAAGAAGCAGCTCAAGGGCGCCCCGATGCCCGCACCGCGTGCCATCCTGGACGCGGCCGTCGAGGGCGC TCAGGTGGACTTCGACACCGCCAGCCGCATCGAGAGCCGCTACTTCACCCAGCTGGTCACCGGCCAGGTCGCCAAGAACA TGATCCAGGCGTTCTTCTTCGACCTCCAGCACATCAACGGCGGCGGCTCCCGCCCCGAGGGCATCGAGCCGGTCAAGATC AACAAGATCGGTGTGCTCGGCGCGGGCATGATGGGCGCCGGCATCGCCTACGTCTCGGCCAAGGCCGGCTTCGACGTGGT GCTCAAGGACGTCAGCCTCGAGGCCGCCCAGAAGGGCAAGGGCTACTCGGAAAAGCTTGAGGCCAAAGCACTTCAGCGGG GCAAGACCACCGAGGAGAAGAGCAAGTCGCTGCTGGACCGCATCACCCCGACGGCCGACGCCGCCGACTTCAAGGGCGTC GACTTCGTGATCGAGGCGGTGTTCGAGAACCAGGAACTCAAGCACAAGGTCTTCCAGGAGATCGAGGACATCGTCGAGCC CAACGCGCTGCTCGGCTCCAACACCTCGACGCTGCCGATCACCGGTCTGGCCACCGGCGTCAAGCGGCAGGAGGACTTCA TCGGGATCCACTTCTTCTCCCCGGTCGACAAGATGCCGCTGGTCGAAATCATCAAGGGCGAGAAGACTTCCGACGAGGCG CTGGCCCGCGTGTTCGACTACACGCTGGCCAGCGGCAAGACCCCGATCGTGGTCAACGACAGCCGCGGCTTCTTCACCAG CCGCGTCATCGGCACCTTCGTCAACGAGGCGCTGGCCATGCTCGGTGAGGGCGTGGCGCCGGCCAGCATCGAGCACGCCG GCTCGCAAGCCGGCTACCCGGCGCCGCCGCTGCAGCTGTCCGACGAGCTCAACCTGGAGCTGATGCACAAGATCGCCGTC GCCACCCGCAAGGGCATCGAGGACGCCGGCGGCACCTACGAGCCGCACCCTGCCGAGGCGGTCGTCGAGAAGATGATCGA AATCGGCCGGCCGTCGCGGTTGAAGGGCGCCGGCTTCTACGAGTACGTGGACGGCAAGCGCACCCGCTTGTGGCCCGGCC TGCAGGAGACGTTCAACTCCGGCAGCACCAGTATTCCGTTGCAGGACATGATCGATCGGATGCTGTTCGCCGAGGCGCTG GAGACGCAGAAGTGCCTGGACGAGGGGGTGCTCACCTCCACCGCCGACGCGAACATCGGCTCGATCATGGGCATCGGCTT CCCGCCGTACACCGGTGGTAGCGCGCAGTTCATCGTCGGCTACGAGGGTGCACACGGGATCGGCAAGGAGGCCTTCGTGG CCCGGGCCAAGGAGCTGGCCGCCCGCTACGGCGACCGCTTCCTGCCGCCGGCGTCGCTCACCAGCTAG
Upstream 100 bases:
>100_bases GTCGACGAGCTCGAGCGCCGCAACGCGCGTCGCGCCCTGATCACGCTGTGCATCGGCGGCGGCATGGGTGTCGCCACCAT CATCGAGAGGGTTTAAGACC
Downstream 100 bases:
>100_bases CGCATCACCTAGCGCGAAAAGACGCGAAAGTCCCCCAAAACCCGGCATTTTGGGGGACTTTCGCGTCTGCTCGCCGGCTA CCGGCGCTGGAACAGGTAGT
Product: FadB_1
Products: NA
Alternate protein names: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 715; Mature: 714
Protein sequence:
>715_residues MAENTIKWDKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSAKKTFFAGGDLKSMINLGPEN AGEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRIAADIKGLVVGLPEVTLGLLPGGGGVTRTVRMF GIQNAFMNILSQGTRFKPDKAKEIGLVDELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSF PALLKKQLKGAPMPAPRAILDAAVEGAQVDFDTASRIESRYFTQLVTGQVAKNMIQAFFFDLQHINGGGSRPEGIEPVKI NKIGVLGAGMMGAGIAYVSAKAGFDVVLKDVSLEAAQKGKGYSEKLEAKALQRGKTTEEKSKSLLDRITPTADAADFKGV DFVIEAVFENQELKHKVFQEIEDIVEPNALLGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEA LARVFDYTLASGKTPIVVNDSRGFFTSRVIGTFVNEALAMLGEGVAPASIEHAGSQAGYPAPPLQLSDELNLELMHKIAV ATRKGIEDAGGTYEPHPAEAVVEKMIEIGRPSRLKGAGFYEYVDGKRTRLWPGLQETFNSGSTSIPLQDMIDRMLFAEAL ETQKCLDEGVLTSTADANIGSIMGIGFPPYTGGSAQFIVGYEGAHGIGKEAFVARAKELAARYGDRFLPPASLTS
Sequences:
>Translated_715_residues MAENTIKWDKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSAKKTFFAGGDLKSMINLGPEN AGEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRIAADIKGLVVGLPEVTLGLLPGGGGVTRTVRMF GIQNAFMNILSQGTRFKPDKAKEIGLVDELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSF PALLKKQLKGAPMPAPRAILDAAVEGAQVDFDTASRIESRYFTQLVTGQVAKNMIQAFFFDLQHINGGGSRPEGIEPVKI NKIGVLGAGMMGAGIAYVSAKAGFDVVLKDVSLEAAQKGKGYSEKLEAKALQRGKTTEEKSKSLLDRITPTADAADFKGV DFVIEAVFENQELKHKVFQEIEDIVEPNALLGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEA LARVFDYTLASGKTPIVVNDSRGFFTSRVIGTFVNEALAMLGEGVAPASIEHAGSQAGYPAPPLQLSDELNLELMHKIAV ATRKGIEDAGGTYEPHPAEAVVEKMIEIGRPSRLKGAGFYEYVDGKRTRLWPGLQETFNSGSTSIPLQDMIDRMLFAEAL ETQKCLDEGVLTSTADANIGSIMGIGFPPYTGGSAQFIVGYEGAHGIGKEAFVARAKELAARYGDRFLPPASLTS >Mature_714_residues AENTIKWDKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSAKKTFFAGGDLKSMINLGPENA GEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEIALACHHRIAADIKGLVVGLPEVTLGLLPGGGGVTRTVRMFG IQNAFMNILSQGTRFKPDKAKEIGLVDELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSFP ALLKKQLKGAPMPAPRAILDAAVEGAQVDFDTASRIESRYFTQLVTGQVAKNMIQAFFFDLQHINGGGSRPEGIEPVKIN KIGVLGAGMMGAGIAYVSAKAGFDVVLKDVSLEAAQKGKGYSEKLEAKALQRGKTTEEKSKSLLDRITPTADAADFKGVD FVIEAVFENQELKHKVFQEIEDIVEPNALLGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEAL ARVFDYTLASGKTPIVVNDSRGFFTSRVIGTFVNEALAMLGEGVAPASIEHAGSQAGYPAPPLQLSDELNLELMHKIAVA TRKGIEDAGGTYEPHPAEAVVEKMIEIGRPSRLKGAGFYEYVDGKRTRLWPGLQETFNSGSTSIPLQDMIDRMLFAEALE TQKCLDEGVLTSTADANIGSIMGIGFPPYTGGSAQFIVGYEGAHGIGKEAFVARAKELAARYGDRFLPPASLTS
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the central section; belongs to the 3-hydroxyacyl- CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI20127408, Length=724, Percent_Identity=31.6298342541436, Blast_Score=333, Evalue=4e-91, Organism=Homo sapiens, GI68989263, Length=706, Percent_Identity=29.0368271954674, Blast_Score=227, Evalue=3e-59, Organism=Homo sapiens, GI261878539, Length=591, Percent_Identity=29.4416243654822, Blast_Score=205, Evalue=1e-52, Organism=Homo sapiens, GI296179429, Length=291, Percent_Identity=32.6460481099656, Blast_Score=142, Evalue=1e-33, Organism=Homo sapiens, GI296179427, Length=308, Percent_Identity=29.8701298701299, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI194097323, Length=164, Percent_Identity=32.9268292682927, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI115430219, Length=276, Percent_Identity=25.7246376811594, Blast_Score=73, Evalue=8e-13, Organism=Homo sapiens, GI157694516, Length=207, Percent_Identity=29.951690821256, Blast_Score=73, Evalue=1e-12, Organism=Homo sapiens, GI213417737, Length=207, Percent_Identity=29.951690821256, Blast_Score=72, Evalue=1e-12, Organism=Escherichia coli, GI1788682, Length=712, Percent_Identity=34.2696629213483, Blast_Score=317, Evalue=2e-87, Organism=Escherichia coli, GI1790281, Length=732, Percent_Identity=32.5136612021858, Blast_Score=295, Evalue=7e-81, Organism=Escherichia coli, GI1787661, Length=288, Percent_Identity=31.9444444444444, Blast_Score=152, Evalue=6e-38, Organism=Escherichia coli, GI1787659, Length=184, Percent_Identity=34.2391304347826, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI221142681, Length=241, Percent_Identity=27.8008298755187, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17558304, Length=746, Percent_Identity=31.3672922252011, Blast_Score=322, Evalue=6e-88, Organism=Caenorhabditis elegans, GI17508951, Length=741, Percent_Identity=33.6032388663968, Blast_Score=315, Evalue=6e-86, Organism=Caenorhabditis elegans, GI17508953, Length=741, Percent_Identity=33.6032388663968, Blast_Score=314, Evalue=9e-86, Organism=Caenorhabditis elegans, GI25144276, Length=626, Percent_Identity=34.0255591054313, Blast_Score=276, Evalue=3e-74, Organism=Caenorhabditis elegans, GI17549919, Length=300, Percent_Identity=34.6666666666667, Blast_Score=159, Evalue=4e-39, Organism=Caenorhabditis elegans, GI71985930, Length=398, Percent_Identity=24.3718592964824, Blast_Score=158, Evalue=1e-38, Organism=Caenorhabditis elegans, GI71985923, Length=369, Percent_Identity=26.2872628726287, Blast_Score=156, Evalue=4e-38, Organism=Caenorhabditis elegans, GI17553560, Length=300, Percent_Identity=33, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17563036, Length=297, Percent_Identity=29.2929292929293, Blast_Score=118, Evalue=9e-27, Organism=Caenorhabditis elegans, GI25145438, Length=189, Percent_Identity=35.978835978836, Blast_Score=86, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17540714, Length=203, Percent_Identity=32.0197044334975, Blast_Score=79, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17554946, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24583077, Length=729, Percent_Identity=31.8244170096022, Blast_Score=298, Evalue=9e-81, Organism=Drosophila melanogaster, GI24583079, Length=729, Percent_Identity=31.8244170096022, Blast_Score=298, Evalue=9e-81, Organism=Drosophila melanogaster, GI19921000, Length=729, Percent_Identity=31.9615912208505, Blast_Score=298, Evalue=9e-81, Organism=Drosophila melanogaster, GI45549573, Length=213, Percent_Identity=28.169014084507, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI24653139, Length=190, Percent_Identity=35.2631578947368, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI20129993, Length=223, Percent_Identity=27.3542600896861, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI20129971, Length=178, Percent_Identity=30.8988764044944, Blast_Score=80, Evalue=7e-15, Organism=Drosophila melanogaster, GI24653477, Length=178, Percent_Identity=30.8988764044944, Blast_Score=80, Evalue=7e-15, Organism=Drosophila melanogaster, GI19921018, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006180 - InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR012802 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =1.1.1.35 [H]
Molecular weight: Translated: 76179; Mature: 76048
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAENTIKWDKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSA CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC KKTFFAGGDLKSMINLGPENAGEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEI CHHEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHCCCCCCCCCCEE ALACHHRIAADIKGLVVGLPEVTLGLLPGGGGVTRTVRMFGIQNAFMNILSQGTRFKPDK EHHHHHHHHHHHHHHEEECCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH AKEIGLVDELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSF HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH PALLKKQLKGAPMPAPRAILDAAVEGAQVDFDTASRIESRYFTQLVTGQVAKNMIQAFFF HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLQHINGGGSRPEGIEPVKINKIGVLGAGMMGAGIAYVSAKAGFDVVLKDVSLEAAQKGK HHHHCCCCCCCCCCCCCEEEEEEEEECCCHHHCCHHEEECCCCCEEEEEHHHHHHHHCCC GYSEKLEAKALQRGKTTEEKSKSLLDRITPTADAADFKGVDFVIEAVFENQELKHKVFQE CHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH IEDIVEPNALLGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEA HHHHHCCCCEECCCCCCEEEHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHCCCCCHHHH LARVFDYTLASGKTPIVVNDSRGFFTSRVIGTFVNEALAMLGEGVAPASIEHAGSQAGYP HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC APPLQLSDELNLELMHKIAVATRKGIEDAGGTYEPHPAEAVVEKMIEIGRPSRLKGAGFY CCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH EYVDGKRTRLWPGLQETFNSGSTSIPLQDMIDRMLFAEALETQKCLDEGVLTSTADANIG HHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SIMGIGFPPYTGGSAQFIVGYEGAHGIGKEAFVARAKELAARYGDRFLPPASLTS CEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure AENTIKWDKDADGIVTLTLDDPTGSANVMNEHYKESMHNAVERLVAEKDSITGVVITSA CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC KKTFFAGGDLKSMINLGPENAGEAFDTVEAVKRDLRALETLGKPVVAAINGAALGGGLEI CHHEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHCCCCCCCCCCEE ALACHHRIAADIKGLVVGLPEVTLGLLPGGGGVTRTVRMFGIQNAFMNILSQGTRFKPDK EHHHHHHHHHHHHHHEEECCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH AKEIGLVDELVGSVEELVPAAKAWIKANPDAHEQPWDKKGYKMPGGTPSSPALAGILPSF HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH PALLKKQLKGAPMPAPRAILDAAVEGAQVDFDTASRIESRYFTQLVTGQVAKNMIQAFFF HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLQHINGGGSRPEGIEPVKINKIGVLGAGMMGAGIAYVSAKAGFDVVLKDVSLEAAQKGK HHHHCCCCCCCCCCCCCEEEEEEEEECCCHHHCCHHEEECCCCCEEEEEHHHHHHHHCCC GYSEKLEAKALQRGKTTEEKSKSLLDRITPTADAADFKGVDFVIEAVFENQELKHKVFQE CHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH IEDIVEPNALLGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEA HHHHHCCCCEECCCCCCEEEHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHCCCCCHHHH LARVFDYTLASGKTPIVVNDSRGFFTSRVIGTFVNEALAMLGEGVAPASIEHAGSQAGYP HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC APPLQLSDELNLELMHKIAVATRKGIEDAGGTYEPHPAEAVVEKMIEIGRPSRLKGAGFY CCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH EYVDGKRTRLWPGLQETFNSGSTSIPLQDMIDRMLFAEALETQKCLDEGVLTSTADANIG HHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SIMGIGFPPYTGGSAQFIVGYEGAHGIGKEAFVARAKELAARYGDRFLPPASLTS CEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA