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The map label for this gene is rpoH

Identifier: 52842873

GI number: 52842873

Start: 3014236

End: 3015114

Strand: Reverse

Name: rpoH

Synonym: lpg2667

Alternate gene names: 52842873

Gene position: 3015114-3014236 (Counterclockwise)

Preceding gene: 52842874

Following gene: 52842871

Centisome position: 88.74

GC content: 41.18

Gene sequence:

>879_bases
GTGTTAATGACCGGAGGAAGTAGTATGAGTCAACAGTTGCAACTTGCTGCAATGAATCTACCTGTTGGTAGTCTTGATTC
TTATATCCATCGAGTAAATCAAATTCCAATGCTGACTTTGGAAGAGGAAATTGCATATGCCGAGCGTTTTCATTCTGAAG
GAGATATAGAAGCTGCTCGACAATTAGTTCTTGCGCATTTGCGCTATGTAGTTCGTGTAGCCCGCGGTTATCTGGGGTAT
GGATTGCCTTTAAGTGATTTAATTCAGGAAGGTAATGTAGGCTTGATGAAAGCCGTAAAACGTTTTGACCCCAAGATGGG
CGTACGCCTTGTTTCTTTTGCTGTTCATTGGATTAAAGCAGAAATTCATGAGTTTGTGCTGCGTAACTGGCGAATAGTTA
AAGTTGCTACAACCAAGGCCCAACGTAAATTATTTTTTAATTTGCGCCAAATGAAAAATCGATTGGGTTGGTTCAGCAAT
GAAGAAGTTGACGCTGTCGCCAAAGATTTGGGCGTTAGCCGAGAAGACGTGTTGTTGATGGAGCAACGTTTAAATGTTAT
GGATTCATCTTATGATGCGCCAGATGTTGATGATAATGATGATGCTTACAAAGCGCCTGAGCGTTATTTGTTTAATGTGA
ACGATGATCCTGCTGTCTTGTTAGAGAATGAGGATACTGGCGATCAGGGGCGTGAAAAATTACTGTTTGCTATGGAACAA
CTGGATGAACGTAGCCAGGATATTTTACAACAACGCTGGCTTGCTGAAGAAAAACTCACGTTACATGATTTGGCAGAAAA
ATATGGTGTCTCTGCTGAACGGGTTAGGCAACTTGAAAAAAATGCCATGAAAAAAATCCGTCAATACATGGAGGGTTAA

Upstream 100 bases:

>100_bases
TGAACTTTTACTTAATTTGCAGTTTTTGAAAATTTATAGCTTAGCATTCATTTTGGTGAATCCTATCAGTTAATAGGATA
TAAATTTTAATACTATTTTA

Downstream 100 bases:

>100_bases
TTACAAAATTTTGAAGCCAATTCCTCTGTATGTGAAACTCATTGTTTCAGCAAACACAATGGTCTGCCTAGCTACTGGAT
CCACCTGGATTAGGTAAAAC

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MLMTGGSSMSQQLQLAAMNLPVGSLDSYIHRVNQIPMLTLEEEIAYAERFHSEGDIEAARQLVLAHLRYVVRVARGYLGY
GLPLSDLIQEGNVGLMKAVKRFDPKMGVRLVSFAVHWIKAEIHEFVLRNWRIVKVATTKAQRKLFFNLRQMKNRLGWFSN
EEVDAVAKDLGVSREDVLLMEQRLNVMDSSYDAPDVDDNDDAYKAPERYLFNVNDDPAVLLENEDTGDQGREKLLFAMEQ
LDERSQDILQQRWLAEEKLTLHDLAEKYGVSAERVRQLEKNAMKKIRQYMEG

Sequences:

>Translated_292_residues
MLMTGGSSMSQQLQLAAMNLPVGSLDSYIHRVNQIPMLTLEEEIAYAERFHSEGDIEAARQLVLAHLRYVVRVARGYLGY
GLPLSDLIQEGNVGLMKAVKRFDPKMGVRLVSFAVHWIKAEIHEFVLRNWRIVKVATTKAQRKLFFNLRQMKNRLGWFSN
EEVDAVAKDLGVSREDVLLMEQRLNVMDSSYDAPDVDDNDDAYKAPERYLFNVNDDPAVLLENEDTGDQGREKLLFAMEQ
LDERSQDILQQRWLAEEKLTLHDLAEKYGVSAERVRQLEKNAMKKIRQYMEG
>Mature_292_residues
MLMTGGSSMSQQLQLAAMNLPVGSLDSYIHRVNQIPMLTLEEEIAYAERFHSEGDIEAARQLVLAHLRYVVRVARGYLGY
GLPLSDLIQEGNVGLMKAVKRFDPKMGVRLVSFAVHWIKAEIHEFVLRNWRIVKVATTKAQRKLFFNLRQMKNRLGWFSN
EEVDAVAKDLGVSREDVLLMEQRLNVMDSSYDAPDVDDNDDAYKAPERYLFNVNDDPAVLLENEDTGDQGREKLLFAMEQ
LDERSQDILQQRWLAEEKLTLHDLAEKYGVSAERVRQLEKNAMKKIRQYMEG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=285, Percent_Identity=59.2982456140351, Blast_Score=327, Evalue=5e-91,
Organism=Escherichia coli, GI1789098, Length=268, Percent_Identity=29.1044776119403, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789448, Length=315, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 33622; Mature: 33622

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMTGGSSMSQQLQLAAMNLPVGSLDSYIHRVNQIPMLTLEEEIAYAERFHSEGDIEAAR
CEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCHHHHH
QLVLAHLRYVVRVARGYLGYGLPLSDLIQEGNVGLMKAVKRFDPKMGVRLVSFAVHWIKA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHH
EIHEFVLRNWRIVKVATTKAQRKLFFNLRQMKNRLGWFSNEEVDAVAKDLGVSREDVLLM
HHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHH
EQRLNVMDSSYDAPDVDDNDDAYKAPERYLFNVNDDPAVLLENEDTGDQGREKLLFAMEQ
HHHHHHHHCCCCCCCCCCCCCHHCCCHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH
LDERSQDILQQRWLAEEKLTLHDLAEKYGVSAERVRQLEKNAMKKIRQYMEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLMTGGSSMSQQLQLAAMNLPVGSLDSYIHRVNQIPMLTLEEEIAYAERFHSEGDIEAAR
CEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCHHHHH
QLVLAHLRYVVRVARGYLGYGLPLSDLIQEGNVGLMKAVKRFDPKMGVRLVSFAVHWIKA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHH
EIHEFVLRNWRIVKVATTKAQRKLFFNLRQMKNRLGWFSNEEVDAVAKDLGVSREDVLLM
HHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHH
EQRLNVMDSSYDAPDVDDNDDAYKAPERYLFNVNDDPAVLLENEDTGDQGREKLLFAMEQ
HHHHHHHHCCCCCCCCCCCCCHHCCCHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHHH
LDERSQDILQQRWLAEEKLTLHDLAEKYGVSAERVRQLEKNAMKKIRQYMEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]