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The map label for this gene is yhcM [H]

Identifier: 52842865

GI number: 52842865

Start: 3006761

End: 3007852

Strand: Reverse

Name: yhcM [H]

Synonym: lpg2659

Alternate gene names: 52842865

Gene position: 3007852-3006761 (Counterclockwise)

Preceding gene: 52842866

Following gene: 52842864

Centisome position: 88.52

GC content: 37.73

Gene sequence:

>1092_bases
TTGCCTGTCATGAGTTTGATTGAGCAGTATGAAGCCGCGATTTATAGAGGTGAAATAGATAGCGATCCTGAGCAGAGAGA
AATCCTTGAACACATGCAGAGGCTTGCTGAGGATTTACAGAAGAAGAGTGACTCTTGGTTTCCCTGGAGAAAAAAGCATC
CCATTAAAGGGCTTTATATCTATGGGCCTGTGGGAGTTGGCAAGACTTATTTGGTGGATTTGTTTTATCAGCATATTGAT
GAGGAAAAAAAGGCGAGATTTCATTTTCATCATTTTATGCAGCAAATTGACGCTCAATTAAGACGATTACAAGGCAAAAA
AAATCCTTTGCAGTATATCGCCAAAGAAATGGCCAAATCGATTCGTTTACTGTGTTTTGATGAGTTTTTAGTTCACGATG
TGGCTTATGCAATGATTTTGGCTGAATTATTACAAGCACTGCATCACTACGGCGTTGTTTTGGTTGTTTCTTCGAATACT
CGTCCGGATGAGTTGTATTTAAATGGGGTGCATAGAGAGAGATTTATTCCGGCTATCGAGATTATTAAAAAAAATTGTGA
GGTTCTGAATCTTAATCAAAAACGAGATTATCGTTTAGGTCGACAACCCTTGTTAGAGGCTTATTTATATCCTTTAAATG
AACAAACACAAGAAGCAATGGAAAAACAGTTTGCTCTAATAACCCGGGAAGAAGACTGCAAAGGTTTTATAACAGTACAA
AATCGTGATATTCCATATATTAAATACGGGACAAGGTCTATTTGGTTTGCTTTTGATGTGATTTGTAATTTTCCTCGTAG
CCAATTGGATTATTTAGAAATTGCTGATCGCTTTGATAATGTCTTCCTGAGTGATGTTTATCAGCTTACTGAAAGTCACA
CAGCACAAGCGATTATGTTTATTCACTTTATAGATGTTATGTATGATAGGGGCATTAAGCTCATTATCTCAGCGGATGTT
CCTGCAGAAGAATTGTACGTTAAAGGTGAAATGAAGGAAACGTTTAAAAGAACGTTGAGCCGTCTAATTGAGATGCAATC
GGTGGACTATCTGAGTCGTCATCCTCGGCGTTTGGTAAAGGAAATGCTGTAA

Upstream 100 bases:

>100_bases
AGGTATTGCCAGTCATTGAATTTGTTGAAACGGGTCATTTTTTTCATGGTAAGCTTTTAATATTAAAAGAAAAACTGATG
GATGCTGTTCGTGATCAGGT

Downstream 100 bases:

>100_bases
TGTGGTATAAAATTTCTTAATTGAGAATGATTCTCGATATCGTTTGTGTTAAAATTAATTAAATGAATCACCGTATTGTT
TATATATTATGCAGATTAGT

Product: ATPase N2B (nucleotide (GTP) binding protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MPVMSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHID
EEKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNT
RPDELYLNGVHRERFIPAIEIIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQ
NRDIPYIKYGTRSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADV
PAEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML

Sequences:

>Translated_363_residues
MPVMSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHID
EEKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNT
RPDELYLNGVHRERFIPAIEIIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQ
NRDIPYIKYGTRSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADV
PAEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML
>Mature_362_residues
PVMSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKHPIKGLYIYGPVGVGKTYLVDLFYQHIDE
EKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKSIRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTR
PDELYLNGVHRERFIPAIEIIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQN
RDIPYIKYGTRSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMFIHFIDVMYDRGIKLIISADVP
AEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVKEML

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=403, Percent_Identity=31.5136476426799, Blast_Score=199, Evalue=4e-51,
Organism=Escherichia coli, GI1789627, Length=341, Percent_Identity=39.0029325513196, Blast_Score=249, Evalue=3e-67,
Organism=Caenorhabditis elegans, GI17505769, Length=356, Percent_Identity=29.7752808988764, Blast_Score=155, Evalue=4e-38,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=35.3312302839117, Blast_Score=167, Evalue=3e-42,
Organism=Drosophila melanogaster, GI20129913, Length=425, Percent_Identity=28.4705882352941, Blast_Score=164, Evalue=6e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43037; Mature: 42906

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVMSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKHPIKGLYI
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
YGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKS
EECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
IRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPDELYLNGVHRERFIPAIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCHHHHHHHHHHH
IIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQ
HHHCCCCEEECCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
NRDIPYIKYGTRSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMF
CCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHFIDVMYDRGIKLIISADVPAEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVK
HHHHHHHHHCCEEEEEECCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
EML
HHC
>Mature Secondary Structure 
PVMSLIEQYEAAIYRGEIDSDPEQREILEHMQRLAEDLQKKSDSWFPWRKKHPIKGLYI
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
YGPVGVGKTYLVDLFYQHIDEEKKARFHFHHFMQQIDAQLRRLQGKKNPLQYIAKEMAKS
EECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
IRLLCFDEFLVHDVAYAMILAELLQALHHYGVVLVVSSNTRPDELYLNGVHRERFIPAIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHCCCHHHHHHHHHHH
IIKKNCEVLNLNQKRDYRLGRQPLLEAYLYPLNEQTQEAMEKQFALITREEDCKGFITVQ
HHHCCCCEEECCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
NRDIPYIKYGTRSIWFAFDVICNFPRSQLDYLEIADRFDNVFLSDVYQLTESHTAQAIMF
CCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHFIDVMYDRGIKLIISADVPAEELYVKGEMKETFKRTLSRLIEMQSVDYLSRHPRRLVK
HHHHHHHHHCCEEEEEECCCCHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
EML
HHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]