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The map label for this gene is lptF [H]

Identifier: 52842836

GI number: 52842836

Start: 2971214

End: 2972215

Strand: Reverse

Name: lptF [H]

Synonym: lpg2630

Alternate gene names: 52842836

Gene position: 2972215-2971214 (Counterclockwise)

Preceding gene: 52842839

Following gene: 52842835

Centisome position: 87.48

GC content: 43.01

Gene sequence:

>1002_bases
ATGAGTAATCAATTCATACAATACTTAAATCGCGCTGCTTCTGGTTCAATTCCTGGTTTTGTGATCATGAAGTTGTTGAT
GTTGGAGTTGCCAAATTTAATGGGTCTGTTACTGCCACTGGGGTTTTATGTCGCTCTTTTATTGGCGTATGGCCGGTTAT
ATGCCGAAAGCGAAATGACGGTTCTGCGAGCTTGTGGTTATGGCCCCAGGCAATTACTGAAACACAGCTTTGCAATGGCT
ACTGTTGTGTTGGTAGTGGTTGCCATCGTAATGATTTGGGCAAGCCCTGTGATTGCTGTTGAACGCATCAAGTTAATACG
TTCTACAGGAATCAAAACTTTAATTCAAACGATTATGCCTGGACGCTTTCATGCCATTAATAGCGGTCAACAAATCTTTT
ATGTCCAATCCATGAATCGCGATCACTCCCAAGCAGAACAGATATTCATGGCAAAACATAGCGTTCAGGATAATAGGCTG
TTATGGGATGTGTTGTGGGCTGATAAAGCATTTGCTGAGGTTAATCCTCAAACAGGCGAGGAATACATCGTGCTGCAAAA
TGGCAAGGAATATCAAGGTGTTCCGGGTCATGCCGATTACCAGATTGCAGAATTTGCAAGCTATAAATCCAAATTGCCCA
ACCCGACTGTTGTTATGCATGATGATGCTCGCACTGCAAAAACAAGAGACTTATGGCCTTTGAACAATCATGATTTGAAA
AAGGCGGCTGAATTACAGTGGCGTATTTCCATTCCTTTAATGGTTTTGACCTTGACTCTGGTTGCCGTTCCACTTAGTCG
TGTCAGCCCTCGTTCTGGAAAATATTCGAAACTTTTGCCAGCCATCATTATCTATATTTTTTATGCTAATTTTATGTTTG
TTTCTCGTGATGCGATTGCTACCGGGAAGATTCCCTGGTGGATAGGGATGTGGTGGGTACACGTGGCGGTTGCCATTCTC
GGCATCCTATTTATTTGGCGCAATCAGGTGAAGCTTGCATGA

Upstream 100 bases:

>100_bases
AGGTCCTCTGTAGGGTATTGTAGTGATTATTTTTCGTTATTTGACTAAAGAAGTGTTTCTTACTTTAATCGCATTAACAG
CGATATTAGTCCTTATTTTC

Downstream 100 bases:

>100_bases
GCAGAAAAATACTTGATCGTTATATTGCCAAAACGGTTTTATCTGCAATCGGCTTGGTGACTTTGATGCTGGTCGGTTTG
CAGATCTTTATTTTGTTTGT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMA
TVVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRL
LWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNNHDLK
KAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAIL
GILFIWRNQVKLA

Sequences:

>Translated_333_residues
MSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMA
TVVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRL
LWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNNHDLK
KAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAIL
GILFIWRNQVKLA
>Mature_332_residues
SNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMAT
VVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRLL
WDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNNHDLKK
AAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILG
ILFIWRNQVKLA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=328, Percent_Identity=27.4390243902439, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 37687; Mature: 37556

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMT
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
GRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRLLWDVLWADKAFAEVNPQTGE
CCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCCC
EYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNNHDLK
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHH
KAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIA
HHHHEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCC
TGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMT
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
GRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRLLWDVLWADKAFAEVNPQTGE
CCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCCC
EYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNNHDLK
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHH
KAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFVSRDAIA
HHHHEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCC
TGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]