Click here to switch to the map view.

The map label for this gene is ycbC [H]

Identifier: 52842834

GI number: 52842834

Start: 2969395

End: 2970147

Strand: Reverse

Name: ycbC [H]

Synonym: lpg2628

Alternate gene names: 52842834

Gene position: 2970147-2969395 (Counterclockwise)

Preceding gene: 52842835

Following gene: 52842832

Centisome position: 87.42

GC content: 41.83

Gene sequence:

>753_bases
ATGGCATTCATTAGACATTTGCTTGAATACTTGCTGCATCCTTTCTTTTTATGTCTTTTGGCATTAGGTATTTGCATTTT
TTTACTATATCGTCGGCTTGCTCCTACTTTCACTAAAGTTATGTTGTTTGTTGTATTGATTGTCTTGCTTGCTATGAGTA
CGGGTTGGTTACCCAGTTATTTAACTTATCAATTAGAGTCTCGATACCCTATAGTGAAGCGGGTTAATCCGAATGTGAAA
TGGGTGGTCGTTCTCGGTGGAGGACAAAATATTGGGGAGGAAATGCCTGCAAATGATCTGTTGACCTCAGCGAGCATCAA
GCGATTGATTGAAGGCGTCCGATTATTCAGAACTTTGCCCGACGCAAAATTGCTTTTATCGGGCGGGGGATCTGCTGGTG
AGCAATCAGAGGCTTTATTATTGACAGAATTAGCCAAGTGGTTTGCAATCGATTCGGAAAAAGTTGTCGTTGAAACTGTT
TCTATTAATACAGCAGATCAGGCGCGTGAATTAGCAGCCATAGTACATGATCAACCCTTTTATCTGGTTACCTCAGCGAT
TCACATGCCACGTTCCATGGCATTATGCCAGCAGCAAGGATTGCACCCCATAGCAGCCCCAACTGATTTTACCTTCTTTT
GGTCTACTGATACCTGGGTCAAAATGGTGATACCTAATTCTTATAACCTGGCCTATACTTCCATTGCTCTTCATGAAATC
CTGGGAAAAATATGGGCTTTGGGATTCAGATAA

Upstream 100 bases:

>100_bases
CAGTGAGCACAGTATTCCAATGGCCGCCTGAATTGGCTGCCTTTAGTCCTACTCTCATCTTTTCTTTAATTGGAATTTAT
TTAATGCGAAGAGTCAGATA

Downstream 100 bases:

>100_bases
GCTGATTTGCATTGAGACTTGGTTTTTAAATTCGCTACACTACTTGTCCGGCAGCCCAGCCGGAAGACCATGCCCACTGG
AAATTATACCCACCTAACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAFIRHLLEYLLHPFFLCLLALGICIFLLYRRLAPTFTKVMLFVVLIVLLAMSTGWLPSYLTYQLESRYPIVKRVNPNVK
WVVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLPDAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETV
SINTADQARELAAIVHDQPFYLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEI
LGKIWALGFR

Sequences:

>Translated_250_residues
MAFIRHLLEYLLHPFFLCLLALGICIFLLYRRLAPTFTKVMLFVVLIVLLAMSTGWLPSYLTYQLESRYPIVKRVNPNVK
WVVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLPDAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETV
SINTADQARELAAIVHDQPFYLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEI
LGKIWALGFR
>Mature_249_residues
AFIRHLLEYLLHPFFLCLLALGICIFLLYRRLAPTFTKVMLFVVLIVLLAMSTGWLPSYLTYQLESRYPIVKRVNPNVKW
VVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLPDAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETVS
INTADQARELAAIVHDQPFYLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEIL
GKIWALGFR

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787150, Length=182, Percent_Identity=32.4175824175824, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 28026; Mature: 27895

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFIRHLLEYLLHPFFLCLLALGICIFLLYRRLAPTFTKVMLFVVLIVLLAMSTGWLPSY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
LTYQLESRYPIVKRVNPNVKWVVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLP
HHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
DAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETVSINTADQARELAAIVHDQPF
CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCH
YLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEI
HHHHHHHHCHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHH
LGKIWALGFR
HHHHHHCCCC
>Mature Secondary Structure 
AFIRHLLEYLLHPFFLCLLALGICIFLLYRRLAPTFTKVMLFVVLIVLLAMSTGWLPSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
LTYQLESRYPIVKRVNPNVKWVVVLGGGQNIGEEMPANDLLTSASIKRLIEGVRLFRTLP
HHHHHCCCCCEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
DAKLLLSGGGSAGEQSEALLLTELAKWFAIDSEKVVVETVSINTADQARELAAIVHDQPF
CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCH
YLVTSAIHMPRSMALCQQQGLHPIAAPTDFTFFWSTDTWVKMVIPNSYNLAYTSIALHEI
HHHHHHHHCHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHH
LGKIWALGFR
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]