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The map label for this gene is tnpR [H]

Identifier: 52842780

GI number: 52842780

Start: 2903857

End: 2904405

Strand: Reverse

Name: tnpR [H]

Synonym: lpg2573

Alternate gene names: 52842780

Gene position: 2904405-2903857 (Counterclockwise)

Preceding gene: 52842781

Following gene: 52842779

Centisome position: 85.48

GC content: 38.62

Gene sequence:

>549_bases
ATGAGAGTAGGGTATGCCAGAGTTTCCACACATGAACAAAATTTAGACTTGCAACTTGATGAGTTAAAGAAAGCAGGATG
TGAACAAATTTTTACGGATAAAATTAGTGGTTCAGTATCCGAACGCCCCGGATTAGAGAAAGTCGAAAATTTTCTTAGAG
AAGGAGATGTTTTAGTTGTTTGGCGATTGGATAGGTTAGGGCGATCTCTCAAACACCTTATTTCTTATGTAAGTAAGTTG
GAAGAAAAGGGAATTGGTTTTCATAGTGTAACAGAAGCTATTAATACTGAAACTCCTTCTGGAAAATTTATGTTTCATGT
ATTTGGTGCCCTTTCTGAGTTTGAACGTAATTTAATAAAAGAGCGTACTCTTGCTGGACTTGAGGCTGCAAGAGCTAGGG
GTCGGCAAGGGGGACGACCAGAAAAACTCAGTGATGAGCAGAAGGAGCTGGTAAAAACACTGTACGCTAATAAAAAGCAT
TCAATTCAATCTATCTGCAAGATGGTCGGTGTTGGGAAGACTACACTTTACAAATATATTAACCAGTGA

Upstream 100 bases:

>100_bases
AATTTGTAATTCACTGCAAAAACCAGTTCGAAAACTCTATACATTAATCAAAGTTCATTTTAATCTATTCTTTTAGTCTT
TCTGAACAAAGGGAATAATA

Downstream 100 bases:

>100_bases
GATTTTTAATATTGAATAAGGATGTTTATGAGCTATTATGAATCAAAAAATAATTTTGAAAGTTTCGTCGCAAAATGTAT
ACATACCTCACGTGCTTTCG

Product: transposase (resolvase, DNA invertase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MRVGYARVSTHEQNLDLQLDELKKAGCEQIFTDKISGSVSERPGLEKVENFLREGDVLVVWRLDRLGRSLKHLISYVSKL
EEKGIGFHSVTEAINTETPSGKFMFHVFGALSEFERNLIKERTLAGLEAARARGRQGGRPEKLSDEQKELVKTLYANKKH
SIQSICKMVGVGKTTLYKYINQ

Sequences:

>Translated_182_residues
MRVGYARVSTHEQNLDLQLDELKKAGCEQIFTDKISGSVSERPGLEKVENFLREGDVLVVWRLDRLGRSLKHLISYVSKL
EEKGIGFHSVTEAINTETPSGKFMFHVFGALSEFERNLIKERTLAGLEAARARGRQGGRPEKLSDEQKELVKTLYANKKH
SIQSICKMVGVGKTTLYKYINQ
>Mature_182_residues
MRVGYARVSTHEQNLDLQLDELKKAGCEQIFTDKISGSVSERPGLEKVENFLREGDVLVVWRLDRLGRSLKHLISYVSKL
EEKGIGFHSVTEAINTETPSGKFMFHVFGALSEFERNLIKERTLAGLEAARARGRQGGRPEKLSDEQKELVKTLYANKKH
SIQSICKMVGVGKTTLYKYINQ

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=178, Percent_Identity=56.1797752808989, Blast_Score=193, Evalue=5e-51,
Organism=Escherichia coli, GI1787638, Length=155, Percent_Identity=40.6451612903226, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787827, Length=155, Percent_Identity=40.6451612903226, Blast_Score=106, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 20598; Mature: 20598

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVGYARVSTHEQNLDLQLDELKKAGCEQIFTDKISGSVSERPGLEKVENFLREGDVLVV
CCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEE
WRLDRLGRSLKHLISYVSKLEEKGIGFHSVTEAINTETPSGKFMFHVFGALSEFERNLIK
EEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
ERTLAGLEAARARGRQGGRPEKLSDEQKELVKTLYANKKHSIQSICKMVGVGKTTLYKYI
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH
NQ
CC
>Mature Secondary Structure
MRVGYARVSTHEQNLDLQLDELKKAGCEQIFTDKISGSVSERPGLEKVENFLREGDVLVV
CCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEE
WRLDRLGRSLKHLISYVSKLEEKGIGFHSVTEAINTETPSGKFMFHVFGALSEFERNLIK
EEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
ERTLAGLEAARARGRQGGRPEKLSDEQKELVKTLYANKKHSIQSICKMVGVGKTTLYKYI
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH
NQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170815; 2555186 [H]