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The map label for this gene is lumQ [H]

Identifier: 52842757

GI number: 52842757

Start: 2881518

End: 2882288

Strand: Reverse

Name: lumQ [H]

Synonym: lpg2549

Alternate gene names: 52842757

Gene position: 2882288-2881518 (Counterclockwise)

Preceding gene: 52842758

Following gene: 52842756

Centisome position: 84.83

GC content: 37.74

Gene sequence:

>771_bases
TTGCTTGGGAGCAATATGTTGCTGACTAATCGTATTGATCTTCGTTCTTACCATACTGAAAGTTGCAGTCACACTCACGA
TTTTGCGCAATTGGTACTGCCCGTCTCAGGTTCTATGGAGCTAGAGGTAGGTCACTACTCCGGTGTCGTTAATGATGATA
TCGGAGTATACATTGCGCCTAATGAACAACATTGTTTTGCCGGAAGTCAAAAAAATCTGTTTTTAGTGATTGATGCTACT
ACTCAAAACTCTCTTCGTGACGAAGCTTTTGAGTCTAATATTCTCAATTTAACCGCCAGTACTAAAAAGCTCATCCAATT
TACCCACCATTATTTAGCACATAATGAAAGAGATTTTTTTACAGACTCTTTAATCAATCAATTATTGTTTCACTTTGCGG
CAAGTTCTTTTTCACCCGAACCGGATCTGGTTGTTATCAGAGCAAAACAATGGATTGATCTTTATTTTGCAGATTCTGTG
AATGTGAACAGGGTAGCGAAACATTGTTATTTGAGCATTAGTCAATTGCAGCGCCGTTTTAAACAGATGTTAGGCTGTGG
TATTGCCGAATATTGGCGGATGAAAAAATTACTCCATGCTAAAAAATTATTATCTCAGAAAAATTGTTCCATTGAAGCAA
TCGCATTTGAAGTAGGTTATGAAAACTTGCCCGCATTTAGTCGCCGTTTTAGTAAAGTATTCGGTGAATCCCCTTCTCAA
TGGAGATCCAAAGCGTTAACAGCAAAGAAAATGCGTGAAATAGATAAATAA

Upstream 100 bases:

>100_bases
CTCAAGCTGATCCAAATAACGCTCTCTAATTTCCTGACTACCTCTCTCAATGGGGCTCAAATTAAGTATGATATAATCTG
TTTCTTTTAAAGGTAAATGC

Downstream 100 bases:

>100_bases
GCTCTGGTTTTAAATTGATAGACTACGAATTCATTTGATGGTATCGATTATTAAATAAGACCAAGATGGTTATTGATGTG
AAAAAATCCAATACTTATTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLGSNMLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAPNEQHCFAGSQKNLFLVIDAT
TQNSLRDEAFESNILNLTASTKKLIQFTHHYLAHNERDFFTDSLINQLLFHFAASSFSPEPDLVVIRAKQWIDLYFADSV
NVNRVAKHCYLSISQLQRRFKQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESPSQ
WRSKALTAKKMREIDK

Sequences:

>Translated_256_residues
MLGSNMLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAPNEQHCFAGSQKNLFLVIDAT
TQNSLRDEAFESNILNLTASTKKLIQFTHHYLAHNERDFFTDSLINQLLFHFAASSFSPEPDLVVIRAKQWIDLYFADSV
NVNRVAKHCYLSISQLQRRFKQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESPSQ
WRSKALTAKKMREIDK
>Mature_256_residues
MLGSNMLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAPNEQHCFAGSQKNLFLVIDAT
TQNSLRDEAFESNILNLTASTKKLIQFTHHYLAHNERDFFTDSLINQLLFHFAASSFSPEPDLVVIRAKQWIDLYFADSV
NVNRVAKHCYLSISQLQRRFKQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESPSQ
WRSKALTAKKMREIDK

Specific function: Probable transcriptional regulator. Its target gene(s) is not yet known [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=125, Percent_Identity=34.4, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29286; Mature: 29286

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGSNMLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAP
CCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHEECCCCEEEEECCCCCEECCCCEEEEEC
NEQHCFAGSQKNLFLVIDATTQNSLRDEAFESNILNLTASTKKLIQFTHHYLAHNERDFF
CCCEECCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCHHH
TDSLINQLLFHFAASSFSPEPDLVVIRAKQWIDLYFADSVNVNRVAKHCYLSISQLQRRF
HHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
KQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESPSQ
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHH
WRSKALTAKKMREIDK
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLGSNMLLTNRIDLRSYHTESCSHTHDFAQLVLPVSGSMELEVGHYSGVVNDDIGVYIAP
CCCCCEEEEECCHHHHHCCCCCCCHHHHHHHHEECCCCEEEEECCCCCEECCCCEEEEEC
NEQHCFAGSQKNLFLVIDATTQNSLRDEAFESNILNLTASTKKLIQFTHHYLAHNERDFF
CCCEECCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCHHH
TDSLINQLLFHFAASSFSPEPDLVVIRAKQWIDLYFADSVNVNRVAKHCYLSISQLQRRF
HHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
KQMLGCGIAEYWRMKKLLHAKKLLSQKNCSIEAIAFEVGYENLPAFSRRFSKVFGESPSQ
HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHH
WRSKALTAKKMREIDK
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7503752 [H]