Click here to switch to the map view.

The map label for this gene is 52842723

Identifier: 52842723

GI number: 52842723

Start: 2843496

End: 2843861

Strand: Reverse

Name: 52842723

Synonym: lpg2515

Alternate gene names: NA

Gene position: 2843861-2843496 (Counterclockwise)

Preceding gene: 52842724

Following gene: 52842722

Centisome position: 83.7

GC content: 39.62

Gene sequence:

>366_bases
CTGGCATTTCTATCTTGTGTGGTAATAAATATCAAGGGAGGTATAGCTATCATGTATATGTTGTATTTTCATGTTCCAGA
AACTCATCTTGACGAAGTAAAAAATGCAGTTTTTGCGGCAGGGGCTGGTTATGTTGATAATTATAACCATTGCGCCTGGC
AAACTTTAGGTGAAGGCCAGTTTATGCCTTTACCAGGTAGCCAGGCGTTTATTGGAGAAATTAATCAATTGGAAAAAGTG
CCTGAATACAAGGTGGAAACGATTTGCGCCAGAGAGAGAATCAAAGAGGTGGTTGCAGCTTTAAAAAAAGCTCATCCCTA
TGAAAGCCCTTCTTATCAAGTGGTACGTATTGAGACAGAGTTCTAA

Upstream 100 bases:

>100_bases
GACATTGGCTGTTGGCGTGGTGGGTTTTTTGTTTCTGGCCTATCAAGAGAAAAATTTTACCCCGGATGCTTCCTTTGCCT
CTCCTGAATTACGATAATTA

Downstream 100 bases:

>100_bases
ATATTAGAGCGAGAAATTCAGGCAGGTCGAATCACCAGATGGTTGGTCATTTAGTAAGAATTTGTTTCTTCAGGATACTT
GTTCAATTGAGTATTCATAG

Product: structural toxin protein (hemagglutinin/hemolysin) RtxA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MAFLSCVVINIKGGIAIMYMLYFHVPETHLDEVKNAVFAAGAGYVDNYNHCAWQTLGEGQFMPLPGSQAFIGEINQLEKV
PEYKVETICARERIKEVVAALKKAHPYESPSYQVVRIETEF

Sequences:

>Translated_121_residues
MAFLSCVVINIKGGIAIMYMLYFHVPETHLDEVKNAVFAAGAGYVDNYNHCAWQTLGEGQFMPLPGSQAFIGEINQLEKV
PEYKVETICARERIKEVVAALKKAHPYESPSYQVVRIETEF
>Mature_120_residues
AFLSCVVINIKGGIAIMYMLYFHVPETHLDEVKNAVFAAGAGYVDNYNHCAWQTLGEGQFMPLPGSQAFIGEINQLEKVP
EYKVETICARERIKEVVAALKKAHPYESPSYQVVRIETEF

Specific function: Unknown

COG id: COG3323

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678
- InterPro:   IPR017221 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 13614; Mature: 13483

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFLSCVVINIKGGIAIMYMLYFHVPETHLDEVKNAVFAAGAGYVDNYNHCAWQTLGEGQ
CCEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC
FMPLPGSQAFIGEINQLEKVPEYKVETICARERIKEVVAALKKAHPYESPSYQVVRIETE
EEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
F
C
>Mature Secondary Structure 
AFLSCVVINIKGGIAIMYMLYFHVPETHLDEVKNAVFAAGAGYVDNYNHCAWQTLGEGQ
CEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC
FMPLPGSQAFIGEINQLEKVPEYKVETICARERIKEVVAALKKAHPYESPSYQVVRIETE
EEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]