Click here to switch to the map view.

The map label for this gene is rmuC [H]

Identifier: 52841190

GI number: 52841190

Start: 1040246

End: 1041508

Strand: Reverse

Name: rmuC [H]

Synonym: lpg0955

Alternate gene names: 52841190

Gene position: 1041508-1040246 (Counterclockwise)

Preceding gene: 52841191

Following gene: 52841189

Centisome position: 30.65

GC content: 38.88

Gene sequence:

>1263_bases
ATGGCATTATTTTCTTCTGTCACTTTGTTTGAGGGCATAGCGTTGGCTATTGCCCTTCAATTCTTATTGCTTTTCTGGGT
TTTGATAAAACAAGCACAGCAAAAAAAACTGACCGAACAACTTGGTGAAAGAATACAACAGGCACTTATCTCTCAACTTC
ACCAGTTACATATTGATTTAAGCCAATCATATCAAACGAGCCAACAATTTATTAATGAAAAGATAGCTCAAGGACAACTG
GCTACACAACAGCTCATTAGTGATGCCATACAAAGACAAATGGCCGATGTCAGAGAGCAAATGACTCATAGCTTCAAACA
TCATGCGAGCTCACTCACTTCTCACTTACAATTACTAACTGAGGAAATTCGTAATCATTTAAACACACTAACTCAGCAGG
TTAATCACAAATTGACCGAAGGTTTTGAGAAAACTTCGTCTACTTTTATTGACGTGGTAAAGCGATTGACCATCATTGAT
GAGGCACAAAAGAAAATCACCGAACTCTCCAGTCATGTTGTCAGCCTTCAGGACGTATTAGTGGACAAAAAAGCTCGCGG
TGCTTTTGGTGAAGTTCAATTATCAACACTCATCAGCAATATGCTTCCCAGCGCAAGTTATCAAATGCAATATACCCTCA
GTAATCAAAAACGGGCTGACTGTGTTTTGTTCTTACCCGAGCCCACTGGAAATATTGTCATAGACGCCAAATTTCCCCTG
GAAACTTATCAACGATTAATCAACAGTGATGCCTTATCCACTGATCGTAAGTCATTACAACAACAATTTCGCCAAGACAT
TCAAAAGCATATTAAGGACATCGCTGAAAAATATATCGTGCCCAATGAAACAACAGATGGCGCCATGATGTTTATTCCTG
CAGAATCTATATTTGCTGAGATTCATGCAAACTATCCTGATTTAATTGCCATGTCTCAAAAGCTAAAAGTCTGGCTGGTA
TCGCCTAGCACATTAATGGCTGTACTGACTACAGCAAGGGCAGTACTTAAAGATGATGCAACTCGCAAACAAGTACACAT
CATTCAAAAACATCTTCAAGCCCTGGCCAATGATTTTCAACGCTTTGAAAAGAGAATGGATAAATTATCCAAACACATTG
ACTTGGCACATCAGGACGTTAATGAAGTCAATACATCAGCCAAAAAGATCACTTCCAGATTCCAAAAAATTGAATCGGTC
GATATCGAATTGGATGAACACGAAGTAACTCAATTAGAATTGGTCGAGTCTGAATCCATCTAA

Upstream 100 bases:

>100_bases
CCTCTATCTGGGTTATTTACGCTTGATAGACTATGGGCAGTTAAAAACTGTGTATCAATACAACCAACCTGTCAAGCTTA
GTCAGTTAGTGGATTAATGA

Downstream 100 bases:

>100_bases
AATAAAATCTTTATGGTGCAGAATACCTAATTTAGCATTATACTAAGCGGTTTTCAGTTTTAATCATTAAATTCCAATGA
ATACAAAAACGCTACTTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MALFSSVTLFEGIALAIALQFLLLFWVLIKQAQQKKLTEQLGERIQQALISQLHQLHIDLSQSYQTSQQFINEKIAQGQL
ATQQLISDAIQRQMADVREQMTHSFKHHASSLTSHLQLLTEEIRNHLNTLTQQVNHKLTEGFEKTSSTFIDVVKRLTIID
EAQKKITELSSHVVSLQDVLVDKKARGAFGEVQLSTLISNMLPSASYQMQYTLSNQKRADCVLFLPEPTGNIVIDAKFPL
ETYQRLINSDALSTDRKSLQQQFRQDIQKHIKDIAEKYIVPNETTDGAMMFIPAESIFAEIHANYPDLIAMSQKLKVWLV
SPSTLMAVLTTARAVLKDDATRKQVHIIQKHLQALANDFQRFEKRMDKLSKHIDLAHQDVNEVNTSAKKITSRFQKIESV
DIELDEHEVTQLELVESESI

Sequences:

>Translated_420_residues
MALFSSVTLFEGIALAIALQFLLLFWVLIKQAQQKKLTEQLGERIQQALISQLHQLHIDLSQSYQTSQQFINEKIAQGQL
ATQQLISDAIQRQMADVREQMTHSFKHHASSLTSHLQLLTEEIRNHLNTLTQQVNHKLTEGFEKTSSTFIDVVKRLTIID
EAQKKITELSSHVVSLQDVLVDKKARGAFGEVQLSTLISNMLPSASYQMQYTLSNQKRADCVLFLPEPTGNIVIDAKFPL
ETYQRLINSDALSTDRKSLQQQFRQDIQKHIKDIAEKYIVPNETTDGAMMFIPAESIFAEIHANYPDLIAMSQKLKVWLV
SPSTLMAVLTTARAVLKDDATRKQVHIIQKHLQALANDFQRFEKRMDKLSKHIDLAHQDVNEVNTSAKKITSRFQKIESV
DIELDEHEVTQLELVESESI
>Mature_419_residues
ALFSSVTLFEGIALAIALQFLLLFWVLIKQAQQKKLTEQLGERIQQALISQLHQLHIDLSQSYQTSQQFINEKIAQGQLA
TQQLISDAIQRQMADVREQMTHSFKHHASSLTSHLQLLTEEIRNHLNTLTQQVNHKLTEGFEKTSSTFIDVVKRLTIIDE
AQKKITELSSHVVSLQDVLVDKKARGAFGEVQLSTLISNMLPSASYQMQYTLSNQKRADCVLFLPEPTGNIVIDAKFPLE
TYQRLINSDALSTDRKSLQQQFRQDIQKHIKDIAEKYIVPNETTDGAMMFIPAESIFAEIHANYPDLIAMSQKLKVWLVS
PSTLMAVLTTARAVLKDDATRKQVHIIQKHLQALANDFQRFEKRMDKLSKHIDLAHQDVNEVNTSAKKITSRFQKIESVD
IELDEHEVTQLELVESESI

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=423, Percent_Identity=25.0591016548463, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 47852; Mature: 47720

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFSSVTLFEGIALAIALQFLLLFWVLIKQAQQKKLTEQLGERIQQALISQLHQLHIDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQSYQTSQQFINEKIAQGQLATQQLISDAIQRQMADVREQMTHSFKHHASSLTSHLQLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIRNHLNTLTQQVNHKLTEGFEKTSSTFIDVVKRLTIIDEAQKKITELSSHVVSLQDVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDKKARGAFGEVQLSTLISNMLPSASYQMQYTLSNQKRADCVLFLPEPTGNIVIDAKFPL
HHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEECCCH
ETYQRLINSDALSTDRKSLQQQFRQDIQKHIKDIAEKYIVPNETTDGAMMFIPAESIFAE
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH
IHANYPDLIAMSQKLKVWLVSPSTLMAVLTTARAVLKDDATRKQVHIIQKHLQALANDFQ
HHCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RFEKRMDKLSKHIDLAHQDVNEVNTSAKKITSRFQKIESVDIELDEHEVTQLELVESESI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALFSSVTLFEGIALAIALQFLLLFWVLIKQAQQKKLTEQLGERIQQALISQLHQLHIDL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQSYQTSQQFINEKIAQGQLATQQLISDAIQRQMADVREQMTHSFKHHASSLTSHLQLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIRNHLNTLTQQVNHKLTEGFEKTSSTFIDVVKRLTIIDEAQKKITELSSHVVSLQDVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDKKARGAFGEVQLSTLISNMLPSASYQMQYTLSNQKRADCVLFLPEPTGNIVIDAKFPL
HHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEEEECCCH
ETYQRLINSDALSTDRKSLQQQFRQDIQKHIKDIAEKYIVPNETTDGAMMFIPAESIFAE
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH
IHANYPDLIAMSQKLKVWLVSPSTLMAVLTTARAVLKDDATRKQVHIIQKHLQALANDFQ
HHCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
RFEKRMDKLSKHIDLAHQDVNEVNTSAKKITSRFQKIESVDIELDEHEVTQLELVESESI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]