| Definition | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome. |
|---|---|
| Accession | NC_002942 |
| Length | 3,397,754 |
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The map label for this gene is ponA
Identifier: 52841160
GI number: 52841160
Start: 998716
End: 1001100
Strand: Reverse
Name: ponA
Synonym: lpg0925
Alternate gene names: 52841160
Gene position: 1001100-998716 (Counterclockwise)
Preceding gene: 52841161
Following gene: 52841154
Centisome position: 29.46
GC content: 40.71
Gene sequence:
>2385_bases ATGAAAAAAATGGCATACTTCTGGCGTAAAGGTCTTTGGGCGCTGATGAGCCTGTTTTTTCTCCTAATAGTAGCTGGCAG CCTTCTATACCTTTATCTCGAAAGCCAATTGCCTAATGTTGATTCATTAAAAACTGTACAATTACAAGTGCCATTACAGA TTTTCAGCAAAGAAGGTTTATTAATTCAGGAATACGGTGAAAAAAAACGTATTCCCGTAACCTATGACGAAATTCCCCCT ACTCTGATCCATGCATTAATTGCAACAGAAGATCAACGATTTTTTGAGCACCCTGGTGTAGACGTTATGGGATTGGGCCG AGCCGCAGTAAGCATGCTCAAAACTGGAACCAAATCTCAAGGTGGCAGTACGATCACCATGCAAGTAGCTCGTAATTTTT TCTTAAGCCGTAAAAAAACATTTTTACGGAAATTCAATGAAATTATGCTTGCTATCAAAATTGACCGGGAATTAAGTAAA GAAAAGATTTTGGAACTTTACTTAAACAGGGTTTATCTGGGTAATCGGGCTTACGGTGTTGGTGCGGCAGCCATGGTTTA TTTTGGAAAATCCCTTAAAGACCTTAATCTGGCTGAACTGGCTATGATAGCAGGACTTCCTCAAGCGCCCTCAACTCAGA ATCCTATCGCTAACCCGCTTGCTGCAAAAAAACGTCGTGACCATGTACTGGAGCGATTACTGGAAGAACATTATATCAAT GAAGAACAATACCAAAATGCTGTCAATCAACCAATTACTGCAAAATACCATGGAACTAATATCAAGGTGAAAGCGCCTTA TGTTGCTGAAATGATTCGTCAGTCTCTGTACGACAATTTTGGCCCCGAAGCGTACACTAAAGGCTATAAGGTATATACAA CCATTGACGGCAAATTACAAAATACTGCCAATGAAGTGGTAGAAAAAAATCTGATTGATTATGATCATCGACATGGTTAC AGAGGGCCAATTGCCAATATAGGTGAAAAAGACAGTCAATCTCCCAAGATTAGGCAAAAATACTTGCGGCAATATCCAGA GCTTAACAGCCTGATTCCAGCAGTGGTCACTGAAGTAAGAGAAAAAGAAGCGACTGCGGCATTACAAAATGGGCAAATAA TTATTATTCCCTGGGAGGGTATGTCCTGGGCCAGGCCGGCACTGAAGAGAGGAGGCTGGGTTGGGAAATCACCAACCAAA GCACAACAAGTGGTAGCAGCAGGCGATATAATCTATGTACACCCCACGGAAAAATCCTGGCAACTCGCCCAAATTCCTGA AGCAGAATCTGCAATGGTTGCTATGAATCCTAAAAATGGCGCCATTGAAGTTTTGGTCGGAGGATTTAACTTCTCAAAAA GTAAATTCAACCGAGCTACCCAATCCAGCAGACAACCAGGCTCCAGTTTCAAACCATTTGTTTACGCTGCGGCTTTGAAC AATGGTTATAATCTTGCTACCTTAATTAATGATGCCCCCATCGTTGTAGACGATCCCAGCCAACCGAATTTATGGCGGCC ACACAATGTGAATCTAAAATTCAATGGCCCTACCCGCCTGAAACAGGCATTAGTTCAATCTAAAAATTTGGTATCTATAA GAATTCTTGATGATATAGGTATTGATTATACGATAGATTTCTTAACTCGTTTTGGCTTTAATAAAAAATCATTGCCTAGA GCCTTATCACTTGCTTTAGGAAGTTTATCCATTAGCCCTATGGATTTAACCACTGCTTATGCAGTCTTTGCTAATGGTGG CTATAAAGTAGAGCCCTACCTCATTGACCATATAACAGATGCTGATGGTAAAATTCTGTTACAAGCCAAACCAAGTGTTG TATGTGACCCTTGTGATAAAGACAAAGTTGATGCCTCTACCTTGGCACCGCGCGTTATTTCTGAAGACATTGCCTTTTTA ATGAATACGGCATTACGCGATGTAATACAGCATGGCACTGGACGTGCTGCACGAGTATTAAATCGTCAAGACATCGCTGG TAAAACAGGGACTACTAATGATCAAGTAGATGCGTGGTTTGCCGGATTTAACTCTAATTTGGTAGTAACAACCTGGATTG GTTTTGATAATCCCAAATCATTGCATGAATATGCTGCAAATCTTGCTCTTCCACTATGGATTGATTTTATGAAAGTAGCA TTAAAAGACAAACCTGAAACTGAATTGAAGCAGCCTGAAAATGTTATAGCTGTTCGAATAGATCCAGTAAGTGGTTTGCT CGCCAAGCCTAACCAGGAAAATGGCATCATTGAGTATTTTCGACAAAATGAGGTTCCATCTGAAGAGGATCAAGGTCCTG TCTATAATGCACATAATGATCAGCAGGAAGAAGAACTAGCGCCAGTGGAAGAAAGTCTGTTTTAA
Upstream 100 bases:
>100_bases TAGCATTTAAATCAGGTTTTTTTCCCTTGTAAACCTCGCAATATTATATAGATTCGCTGTATAATATTGCACTACTCACA TTTAACGAAAACGAAATTCT
Downstream 100 bases:
>100_bases TTTAAGATTTATATTCTGATGAAGCAAAAAACCCGTATTCAATTTGTGTAATACGGGTTTTAATCTACTAATTATCGTCC TGATAAAGCAGCTGCAGCTG
Product: penicillin binding protein 1A
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 794; Mature: 794
Protein sequence:
>794_residues MKKMAYFWRKGLWALMSLFFLLIVAGSLLYLYLESQLPNVDSLKTVQLQVPLQIFSKEGLLIQEYGEKKRIPVTYDEIPP TLIHALIATEDQRFFEHPGVDVMGLGRAAVSMLKTGTKSQGGSTITMQVARNFFLSRKKTFLRKFNEIMLAIKIDRELSK EKILELYLNRVYLGNRAYGVGAAAMVYFGKSLKDLNLAELAMIAGLPQAPSTQNPIANPLAAKKRRDHVLERLLEEHYIN EEQYQNAVNQPITAKYHGTNIKVKAPYVAEMIRQSLYDNFGPEAYTKGYKVYTTIDGKLQNTANEVVEKNLIDYDHRHGY RGPIANIGEKDSQSPKIRQKYLRQYPELNSLIPAVVTEVREKEATAALQNGQIIIIPWEGMSWARPALKRGGWVGKSPTK AQQVVAAGDIIYVHPTEKSWQLAQIPEAESAMVAMNPKNGAIEVLVGGFNFSKSKFNRATQSSRQPGSSFKPFVYAAALN NGYNLATLINDAPIVVDDPSQPNLWRPHNVNLKFNGPTRLKQALVQSKNLVSIRILDDIGIDYTIDFLTRFGFNKKSLPR ALSLALGSLSISPMDLTTAYAVFANGGYKVEPYLIDHITDADGKILLQAKPSVVCDPCDKDKVDASTLAPRVISEDIAFL MNTALRDVIQHGTGRAARVLNRQDIAGKTGTTNDQVDAWFAGFNSNLVVTTWIGFDNPKSLHEYAANLALPLWIDFMKVA LKDKPETELKQPENVIAVRIDPVSGLLAKPNQENGIIEYFRQNEVPSEEDQGPVYNAHNDQQEEELAPVEESLF
Sequences:
>Translated_794_residues MKKMAYFWRKGLWALMSLFFLLIVAGSLLYLYLESQLPNVDSLKTVQLQVPLQIFSKEGLLIQEYGEKKRIPVTYDEIPP TLIHALIATEDQRFFEHPGVDVMGLGRAAVSMLKTGTKSQGGSTITMQVARNFFLSRKKTFLRKFNEIMLAIKIDRELSK EKILELYLNRVYLGNRAYGVGAAAMVYFGKSLKDLNLAELAMIAGLPQAPSTQNPIANPLAAKKRRDHVLERLLEEHYIN EEQYQNAVNQPITAKYHGTNIKVKAPYVAEMIRQSLYDNFGPEAYTKGYKVYTTIDGKLQNTANEVVEKNLIDYDHRHGY RGPIANIGEKDSQSPKIRQKYLRQYPELNSLIPAVVTEVREKEATAALQNGQIIIIPWEGMSWARPALKRGGWVGKSPTK AQQVVAAGDIIYVHPTEKSWQLAQIPEAESAMVAMNPKNGAIEVLVGGFNFSKSKFNRATQSSRQPGSSFKPFVYAAALN NGYNLATLINDAPIVVDDPSQPNLWRPHNVNLKFNGPTRLKQALVQSKNLVSIRILDDIGIDYTIDFLTRFGFNKKSLPR ALSLALGSLSISPMDLTTAYAVFANGGYKVEPYLIDHITDADGKILLQAKPSVVCDPCDKDKVDASTLAPRVISEDIAFL MNTALRDVIQHGTGRAARVLNRQDIAGKTGTTNDQVDAWFAGFNSNLVVTTWIGFDNPKSLHEYAANLALPLWIDFMKVA LKDKPETELKQPENVIAVRIDPVSGLLAKPNQENGIIEYFRQNEVPSEEDQGPVYNAHNDQQEEELAPVEESLF >Mature_794_residues MKKMAYFWRKGLWALMSLFFLLIVAGSLLYLYLESQLPNVDSLKTVQLQVPLQIFSKEGLLIQEYGEKKRIPVTYDEIPP TLIHALIATEDQRFFEHPGVDVMGLGRAAVSMLKTGTKSQGGSTITMQVARNFFLSRKKTFLRKFNEIMLAIKIDRELSK EKILELYLNRVYLGNRAYGVGAAAMVYFGKSLKDLNLAELAMIAGLPQAPSTQNPIANPLAAKKRRDHVLERLLEEHYIN EEQYQNAVNQPITAKYHGTNIKVKAPYVAEMIRQSLYDNFGPEAYTKGYKVYTTIDGKLQNTANEVVEKNLIDYDHRHGY RGPIANIGEKDSQSPKIRQKYLRQYPELNSLIPAVVTEVREKEATAALQNGQIIIIPWEGMSWARPALKRGGWVGKSPTK AQQVVAAGDIIYVHPTEKSWQLAQIPEAESAMVAMNPKNGAIEVLVGGFNFSKSKFNRATQSSRQPGSSFKPFVYAAALN NGYNLATLINDAPIVVDDPSQPNLWRPHNVNLKFNGPTRLKQALVQSKNLVSIRILDDIGIDYTIDFLTRFGFNKKSLPR ALSLALGSLSISPMDLTTAYAVFANGGYKVEPYLIDHITDADGKILLQAKPSVVCDPCDKDKVDASTLAPRVISEDIAFL MNTALRDVIQHGTGRAARVLNRQDIAGKTGTTNDQVDAWFAGFNSNLVVTTWIGFDNPKSLHEYAANLALPLWIDFMKVA LKDKPETELKQPENVIAVRIDPVSGLLAKPNQENGIIEYFRQNEVPSEEDQGPVYNAHNDQQEEELAPVEESLF
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=841, Percent_Identity=43.4007134363853, Blast_Score=678, Evalue=0.0, Organism=Escherichia coli, GI1786343, Length=250, Percent_Identity=34.4, Blast_Score=143, Evalue=3e-35, Organism=Escherichia coli, GI1788867, Length=239, Percent_Identity=36.4016736401674, Blast_Score=142, Evalue=6e-35, Organism=Escherichia coli, GI1789601, Length=138, Percent_Identity=37.6811594202899, Blast_Score=91, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 88715; Mature: 88715
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKMAYFWRKGLWALMSLFFLLIVAGSLLYLYLESQLPNVDSLKTVQLQVPLQIFSKEGL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHCCCCE LIQEYGEKKRIPVTYDEIPPTLIHALIATEDQRFFEHPGVDVMGLGRAAVSMLKTGTKSQ EEEECCCCCCCCEEHHCCCHHHHHHHHHCCCHHHHHCCCCCEEECCHHHHHHHHCCCCCC GGSTITMQVARNFFLSRKKTFLRKFNEIMLAIKIDRELSKEKILELYLNRVYLGNRAYGV CCCEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHEECCCCCCC GAAAMVYFGKSLKDLNLAELAMIAGLPQAPSTQNPIANPLAAKKRRDHVLERLLEEHYIN HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC EEQYQNAVNQPITAKYHGTNIKVKAPYVAEMIRQSLYDNFGPEAYTKGYKVYTTIDGKLQ HHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHCCCCHHHHCCEEEEEEECCHHH NTANEVVEKNLIDYDHRHGYRGPIANIGEKDSQSPKIRQKYLRQYPELNSLIPAVVTEVR HHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH EKEATAALQNGQIIIIPWEGMSWARPALKRGGWVGKSPTKAQQVVAAGDIIYVHPTEKSW HHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHEEECCEEEEECCCCCC QLAQIPEAESAMVAMNPKNGAIEVLVGGFNFSKSKFNRATQSSRQPGSSFKPFVYAAALN EEECCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEC NGYNLATLINDAPIVVDDPSQPNLWRPHNVNLKFNGPTRLKQALVQSKNLVSIRILDDIG CCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEEEECCC IDYTIDFLTRFGFNKKSLPRALSLALGSLSISPMDLTTAYAVFANGGYKVEPYLIDHITD CCEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCEEECCEEEEEECC ADGKILLQAKPSVVCDPCDKDKVDASTLAPRVISEDIAFLMNTALRDVIQHGTGRAARVL CCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH NRQDIAGKTGTTNDQVDAWFAGFNSNLVVTTWIGFDNPKSLHEYAANLALPLWIDFMKVA CHHHCCCCCCCCCCCCHHHEECCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHH LKDKPETELKQPENVIAVRIDPVSGLLAKPNQENGIIEYFRQNEVPSEEDQGPVYNAHND HCCCCCHHHCCCCCEEEEEECCCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC QQEEELAPVEESLF CCHHHHCCHHHHCC >Mature Secondary Structure MKKMAYFWRKGLWALMSLFFLLIVAGSLLYLYLESQLPNVDSLKTVQLQVPLQIFSKEGL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHCCCCE LIQEYGEKKRIPVTYDEIPPTLIHALIATEDQRFFEHPGVDVMGLGRAAVSMLKTGTKSQ EEEECCCCCCCCEEHHCCCHHHHHHHHHCCCHHHHHCCCCCEEECCHHHHHHHHCCCCCC GGSTITMQVARNFFLSRKKTFLRKFNEIMLAIKIDRELSKEKILELYLNRVYLGNRAYGV CCCEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHEECCCCCCC GAAAMVYFGKSLKDLNLAELAMIAGLPQAPSTQNPIANPLAAKKRRDHVLERLLEEHYIN HHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC EEQYQNAVNQPITAKYHGTNIKVKAPYVAEMIRQSLYDNFGPEAYTKGYKVYTTIDGKLQ HHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHCCCCHHHHCCEEEEEEECCHHH NTANEVVEKNLIDYDHRHGYRGPIANIGEKDSQSPKIRQKYLRQYPELNSLIPAVVTEVR HHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH EKEATAALQNGQIIIIPWEGMSWARPALKRGGWVGKSPTKAQQVVAAGDIIYVHPTEKSW HHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHEEECCEEEEECCCCCC QLAQIPEAESAMVAMNPKNGAIEVLVGGFNFSKSKFNRATQSSRQPGSSFKPFVYAAALN EEECCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEC NGYNLATLINDAPIVVDDPSQPNLWRPHNVNLKFNGPTRLKQALVQSKNLVSIRILDDIG CCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEEEEECCC IDYTIDFLTRFGFNKKSLPRALSLALGSLSISPMDLTTAYAVFANGGYKVEPYLIDHITD CCEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCEEECCEEEEEECC ADGKILLQAKPSVVCDPCDKDKVDASTLAPRVISEDIAFLMNTALRDVIQHGTGRAARVL CCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH NRQDIAGKTGTTNDQVDAWFAGFNSNLVVTTWIGFDNPKSLHEYAANLALPLWIDFMKVA CHHHCCCCCCCCCCCCHHHEECCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHH LKDKPETELKQPENVIAVRIDPVSGLLAKPNQENGIIEYFRQNEVPSEEDQGPVYNAHND HCCCCCHHHCCCCCEEEEEECCCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC QQEEELAPVEESLF CCHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043; 7901733 [H]