Click here to switch to the map view.

The map label for this gene is petB [H]

Identifier: 39998023

GI number: 39998023

Start: 3228939

End: 3229559

Strand: Reverse

Name: petB [H]

Synonym: GSU2932

Alternate gene names: 39998023

Gene position: 3229559-3228939 (Counterclockwise)

Preceding gene: 39998024

Following gene: 39998021

Centisome position: 84.67

GC content: 62.16

Gene sequence:

>621_bases
ATGATCAAGGAATTCGCCAAACATCTCTTCCCCCGGGTGGTCCTGCGGGAGAACCTGCGGTTCAGCTACACATTCTGTCT
GGGCGGACTCGCCTTTACGGCATTCTTCGCCCTGATCGTGTCCGGGGTACTGCTGCTGTTCTACTACCAGCCGACCCCCG
ACCGGGCCTTTGATTCGATTCTGTTCCTGGAGTCGACGGTTGTGGGGGGAAAGTACCTGCGGGCGCTTCACCGGCTTGCC
TCCCACGGGTTCCTTTGTCTGATGTTCCTCCACATCCTGCGGGTCGTGCTCACCGGTGCCTTCCGGCCGCCCCGCGAACT
GACCTGGGTGGTGGGGGTGGGACTCCTGGGACTGTCGGTGTTCGAGGCATACACCGGCTATCTGCTCCCCATGGACCAAC
TGGCCTTCTGGGCCACCCGTACCGGCATGGAGTTGCTGGCCACCTTTCCGGGCGGCGGCTGGCTCCGGGCCGTCCTTGTT
CCCGACGGGGTGGGAGAGTCTCTATCGCTCCTGCGCTTCTACGCCCTGCACGTGGTCATCGTTCCGTTGGGCATCATGGG
GCTGTCGTTTCTCCATTTCTACCGGGTACGCAAGACCAAGGGGCTGCTTCCCTATCTGTGA

Upstream 100 bases:

>100_bases
GCTTCGACCTGAAGGGAAACGTTGCCAAAGGTCCCGCCGACCGTCCCCTGGCCCGCCATCGGGTGGAGGACCGGGGCGAG
CGGGTGGAGATTGTCATCGG

Downstream 100 bases:

>100_bases
GAGGAGCGGATGCCGTGAGAGAACCTATGCATTGCGGTGAACCGGAGCGGGACCTGCGCCGCGGGCCCCGGGGTGGCGGG
GAATACGTCCGGAGTTCTCC

Product: cytochrome b/b6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MIKEFAKHLFPRVVLRENLRFSYTFCLGGLAFTAFFALIVSGVLLLFYYQPTPDRAFDSILFLESTVVGGKYLRALHRLA
SHGFLCLMFLHILRVVLTGAFRPPRELTWVVGVGLLGLSVFEAYTGYLLPMDQLAFWATRTGMELLATFPGGGWLRAVLV
PDGVGESLSLLRFYALHVVIVPLGIMGLSFLHFYRVRKTKGLLPYL

Sequences:

>Translated_206_residues
MIKEFAKHLFPRVVLRENLRFSYTFCLGGLAFTAFFALIVSGVLLLFYYQPTPDRAFDSILFLESTVVGGKYLRALHRLA
SHGFLCLMFLHILRVVLTGAFRPPRELTWVVGVGLLGLSVFEAYTGYLLPMDQLAFWATRTGMELLATFPGGGWLRAVLV
PDGVGESLSLLRFYALHVVIVPLGIMGLSFLHFYRVRKTKGLLPYL
>Mature_206_residues
MIKEFAKHLFPRVVLRENLRFSYTFCLGGLAFTAFFALIVSGVLLLFYYQPTPDRAFDSILFLESTVVGGKYLRALHRLA
SHGFLCLMFLHILRVVLTGAFRPPRELTWVVGVGLLGLSVFEAYTGYLLPMDQLAFWATRTGMELLATFPGGGWLRAVLV
PDGVGESLSLLRFYALHVVIVPLGIMGLSFLHFYRVRKTKGLLPYL

Specific function: Component of the cytochrome bc complex which donates electrons to the photosynthetic reaction center [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=202, Percent_Identity=29.2079207920792, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 23181; Mature: 23181

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEFAKHLFPRVVLRENLRFSYTFCLGGLAFTAFFALIVSGVLLLFYYQPTPDRAFDSI
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LFLESTVVGGKYLRALHRLASHGFLCLMFLHILRVVLTGAFRPPRELTWVVGVGLLGLSV
HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FEAYTGYLLPMDQLAFWATRTGMELLATFPGGGWLRAVLVPDGVGESLSLLRFYALHVVI
HHHHHCCCCCHHHHHHHHHHHCHHHEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
VPLGIMGLSFLHFYRVRKTKGLLPYL
HHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIKEFAKHLFPRVVLRENLRFSYTFCLGGLAFTAFFALIVSGVLLLFYYQPTPDRAFDSI
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LFLESTVVGGKYLRALHRLASHGFLCLMFLHILRVVLTGAFRPPRELTWVVGVGLLGLSV
HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FEAYTGYLLPMDQLAFWATRTGMELLATFPGGGWLRAVLVPDGVGESLSLLRFYALHVVI
HHHHHCCCCCHHHHHHHHHHHCHHHEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
VPLGIMGLSFLHFYRVRKTKGLLPYL
HHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9843979 [H]