| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is 39997978
Identifier: 39997978
GI number: 39997978
Start: 3170511
End: 3173165
Strand: Reverse
Name: 39997978
Synonym: GSU2887
Alternate gene names: NA
Gene position: 3173165-3170511 (Counterclockwise)
Preceding gene: 39997979
Following gene: 39997976
Centisome position: 83.19
GC content: 65.01
Gene sequence:
>2655_bases TTGAACAGGTCGAGGATTATCACCATTTTCCCGCAGATTCTGATGTGCCTGTGGGGGGTAGCCGTCATGCTGACGGCCGG TCCGGGAATTGTCCGGGATGCCCAGGCTCTTACCGCAACCGACTGCACGACGTGCCACACCGGGAGCACCTACGGCTCTA TTCCCCAGCAACACCATGCGGTAGCCAGCAGCAAGGGCATCACCTGCCTCCAGTGCCACCGGGCGATCCCCGACGGATCG GGCGGATTCACCATCGAGGTGATCACCGACTGTATCGTCTGCCACGGCCAAGTGGACCACGCTGCGGCCCACAACATGGT TGCCACCGCGGCCGATTGCGCCCAGTGCCACACCCAGACCCCCGTGGCCGAGCACCTGAGCAGAACGTCGTCCTGCTCCA CCTGCCATTCCAGCACGGCTCCCGCGGTGCAGAAGGCCATCACCGACGGCCGGGCCGGCGTCATGGTCAATTGTATCACC TGCCACGGCGCGGTGAACCACATTGTCCAGCATGACAGGGCATTCCCCTCTCCCGACTGCGTGCAGTGCCACGCCCAAGG GGTCGTCTTCGAACACCTGAACCGGACCTCCACCTGCGCCACCTGTCACGCCAGCACCCAGCCCGCGGTGCAGAAAGCCA TCGCCGACGGCCGGGCCGGCATCGCCGTGTACTGTGTTACCTGCCACGGCACGGTGAACCACGTGCTTCAGCACGACAAG GTTTCCACGCCGGCGGATTGCTCCGGCTGCCACAATCAGGGGCCGGTCCAGGAGCACACCAACCGGACCTCCACCTGCGC CACCTGCCACAACAGTTCCAGCACCACGGTGCAGCAGACGATCACCCTCGGCCGGACCGGCACCATGGTTTCCTGCGCCA ACTGTCACGGCGCCGTGAACCACATCCAGCAACACGACAAGGCCATGGCCAATGCCGACTGTGCCCAGTGCCACAACCTG GGGGTGGTGAACGAGCACCTTTCGCGGGCTTCAACCTGCGCCACCTGCCACTCGAGCGCCGCTCCCGCGGTCCAGCAGGC CATTGCCGCCGGCAAGGCGGGCACCACGGTCTACTGCTCCAACTGCCACGCGAACGTGAACCACGTCCAGCAGCACGACA AGGTGACCACCCCTGCCGATTGCGCCTCGTGCCATGGCCAGGGCGTGGTGTACGAGCACACGAACCGCTCTTCCACCTGC GCCACCTGCCACAACAGCACCAACGCCGCGGTGCAGAAGACGATAAGCGACGGCCGCGCCGGGATCACGGTCTCCTGCGC CAGCTGCCACGGGGCGGTTAACCACGTGGCCCAGCACGATCAGGCGCTTGCCTCTCCGGCCTGTGCCCAGTGCCACACCA AGAGCGTGCTCGACGAGCACCTGACCCGCACGTCTACCTGCGCCACCTGCCACTCCAGCAGCAGCACGGCGGTCCAGCAG GCCATTGCCGCGGGGCGGAGCGGCCAGGCGGTCTCCTGCGTGGACTGCCACGGCCAGGTGACCCACCAGAGCGCCCACGA CGGCAAGGTGCTGGTCCCGTACGGCGACTGCAGCTCCTGTCATATTCCGAACCTGGTTGAGCTGCACGCTGTGAAGGGCT TTCAGTGCGCGGCCTGCCACGCCAGCGATAACGCGTCGGTGACGGCGGCGGTGCAGAAGGGGCTGGGCGGCACGCTCGTC TATTGTGCTGACTGCCACAGCGCCATCGGCGGCTTCGGCAACCACGCCGGGCAGCACGACATGGTGGGACTGCCCGCCCC CAACTGCGGCCAGTGCCATTCGGACAACGCGGTGACAGCCCATGAGAAGGCCGCCACACCGGTCTACTGCAACGGCTGCC ATACGAGCACCAATGAGCTGTACGTCAAGACCATCAGCGACGGCATGGCTGGAATCCAGCAGAACTGCCGCAGTTGCCAC ACCATGATCCACGGCGGCGCCAACCGGGGCCCTTCGGCCAACGCGGGGGCTGACCGGACCGTTACCGTCGGCCAGGCCAT CACCTTCTCCGGTTCGGGCTCCAGCGATCCTGACGGAAGTATCGTGGGGTATGTGTGGAACTTCGGCGACGGCACCACGG GAAGCGGGGTGAGCGTCACCAAAACCTACACCACGGCAGGCACCTACACGGTGACCCTTACCGTGACCGACAACAGCGGC GACACGGCCAGCGACACGGCGGTGGTGACGGTTCAGAGCCAGGCGGGCAGCAGTTCGGTGTTTGCGGACCAGGTGCTGTA CCTGCAGCGGCTGAGCAGCGTCACCTCCTCTGACAGCAACAGCAACGACCTGACCTCGAAGTTCCGCGACAGCAACCTTG CAGACCGGTATCTGCTGCAGTACAAGAGTGGCGAGAACTACGTCATCGCCATGAAGCTGAACCGCGACGCCCTGACCGCA AGCAAGGTAGTGCTGCGGCTGTATGTCTCCTCCATCAGTTCGTCGCGGACGCTGCGCATCTATCCGTACCAGTCCAACGG CACATCGGTGAACAGCTACTACTCGGTGAGCTACAGCACGAGCAGCGCCGGCTGGAAAGATATCGACGTCACCTCCATCG CGCAGCGGATGAACGGCTACGGCTGGATGAAGTTCCGTGTCACCACCACCTCGAGCAGCCTCTATGTTGCCGAGGGGGCC TTCCTGGTGCAGTAG
Upstream 100 bases:
>100_bases TCCGCCTGTGATGTGTTTTTGACATCGCTGTATATTGAATTGTGTATTTGTATTGTTAACCCGCCAGTGTGAAGAATCAT TGAAAGGAGGACTTTGCGCT
Downstream 100 bases:
>100_bases CGGGGAGGCGAGACGTGAACCACATCCAACTGACCGATCAATGGAGGAGCCCTATGAAACGCATAGTCATGACATTCGCA GCACTGCTCGCCATGGCCGT
Product: cytochrome C
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 884; Mature: 884
Protein sequence:
>884_residues MNRSRIITIFPQILMCLWGVAVMLTAGPGIVRDAQALTATDCTTCHTGSTYGSIPQQHHAVASSKGITCLQCHRAIPDGS GGFTIEVITDCIVCHGQVDHAAAHNMVATAADCAQCHTQTPVAEHLSRTSSCSTCHSSTAPAVQKAITDGRAGVMVNCIT CHGAVNHIVQHDRAFPSPDCVQCHAQGVVFEHLNRTSTCATCHASTQPAVQKAIADGRAGIAVYCVTCHGTVNHVLQHDK VSTPADCSGCHNQGPVQEHTNRTSTCATCHNSSSTTVQQTITLGRTGTMVSCANCHGAVNHIQQHDKAMANADCAQCHNL GVVNEHLSRASTCATCHSSAAPAVQQAIAAGKAGTTVYCSNCHANVNHVQQHDKVTTPADCASCHGQGVVYEHTNRSSTC ATCHNSTNAAVQKTISDGRAGITVSCASCHGAVNHVAQHDQALASPACAQCHTKSVLDEHLTRTSTCATCHSSSSTAVQQ AIAAGRSGQAVSCVDCHGQVTHQSAHDGKVLVPYGDCSSCHIPNLVELHAVKGFQCAACHASDNASVTAAVQKGLGGTLV YCADCHSAIGGFGNHAGQHDMVGLPAPNCGQCHSDNAVTAHEKAATPVYCNGCHTSTNELYVKTISDGMAGIQQNCRSCH TMIHGGANRGPSANAGADRTVTVGQAITFSGSGSSDPDGSIVGYVWNFGDGTTGSGVSVTKTYTTAGTYTVTLTVTDNSG DTASDTAVVTVQSQAGSSSVFADQVLYLQRLSSVTSSDSNSNDLTSKFRDSNLADRYLLQYKSGENYVIAMKLNRDALTA SKVVLRLYVSSISSSRTLRIYPYQSNGTSVNSYYSVSYSTSSAGWKDIDVTSIAQRMNGYGWMKFRVTTTSSSLYVAEGA FLVQ
Sequences:
>Translated_884_residues MNRSRIITIFPQILMCLWGVAVMLTAGPGIVRDAQALTATDCTTCHTGSTYGSIPQQHHAVASSKGITCLQCHRAIPDGS GGFTIEVITDCIVCHGQVDHAAAHNMVATAADCAQCHTQTPVAEHLSRTSSCSTCHSSTAPAVQKAITDGRAGVMVNCIT CHGAVNHIVQHDRAFPSPDCVQCHAQGVVFEHLNRTSTCATCHASTQPAVQKAIADGRAGIAVYCVTCHGTVNHVLQHDK VSTPADCSGCHNQGPVQEHTNRTSTCATCHNSSSTTVQQTITLGRTGTMVSCANCHGAVNHIQQHDKAMANADCAQCHNL GVVNEHLSRASTCATCHSSAAPAVQQAIAAGKAGTTVYCSNCHANVNHVQQHDKVTTPADCASCHGQGVVYEHTNRSSTC ATCHNSTNAAVQKTISDGRAGITVSCASCHGAVNHVAQHDQALASPACAQCHTKSVLDEHLTRTSTCATCHSSSSTAVQQ AIAAGRSGQAVSCVDCHGQVTHQSAHDGKVLVPYGDCSSCHIPNLVELHAVKGFQCAACHASDNASVTAAVQKGLGGTLV YCADCHSAIGGFGNHAGQHDMVGLPAPNCGQCHSDNAVTAHEKAATPVYCNGCHTSTNELYVKTISDGMAGIQQNCRSCH TMIHGGANRGPSANAGADRTVTVGQAITFSGSGSSDPDGSIVGYVWNFGDGTTGSGVSVTKTYTTAGTYTVTLTVTDNSG DTASDTAVVTVQSQAGSSSVFADQVLYLQRLSSVTSSDSNSNDLTSKFRDSNLADRYLLQYKSGENYVIAMKLNRDALTA SKVVLRLYVSSISSSRTLRIYPYQSNGTSVNSYYSVSYSTSSAGWKDIDVTSIAQRMNGYGWMKFRVTTTSSSLYVAEGA FLVQ >Mature_884_residues MNRSRIITIFPQILMCLWGVAVMLTAGPGIVRDAQALTATDCTTCHTGSTYGSIPQQHHAVASSKGITCLQCHRAIPDGS GGFTIEVITDCIVCHGQVDHAAAHNMVATAADCAQCHTQTPVAEHLSRTSSCSTCHSSTAPAVQKAITDGRAGVMVNCIT CHGAVNHIVQHDRAFPSPDCVQCHAQGVVFEHLNRTSTCATCHASTQPAVQKAIADGRAGIAVYCVTCHGTVNHVLQHDK VSTPADCSGCHNQGPVQEHTNRTSTCATCHNSSSTTVQQTITLGRTGTMVSCANCHGAVNHIQQHDKAMANADCAQCHNL GVVNEHLSRASTCATCHSSAAPAVQQAIAAGKAGTTVYCSNCHANVNHVQQHDKVTTPADCASCHGQGVVYEHTNRSSTC ATCHNSTNAAVQKTISDGRAGITVSCASCHGAVNHVAQHDQALASPACAQCHTKSVLDEHLTRTSTCATCHSSSSTAVQQ AIAAGRSGQAVSCVDCHGQVTHQSAHDGKVLVPYGDCSSCHIPNLVELHAVKGFQCAACHASDNASVTAAVQKGLGGTLV YCADCHSAIGGFGNHAGQHDMVGLPAPNCGQCHSDNAVTAHEKAATPVYCNGCHTSTNELYVKTISDGMAGIQQNCRSCH TMIHGGANRGPSANAGADRTVTVGQAITFSGSGSSDPDGSIVGYVWNFGDGTTGSGVSVTKTYTTAGTYTVTLTVTDNSG DTASDTAVVTVQSQAGSSSVFADQVLYLQRLSSVTSSDSNSNDLTSKFRDSNLADRYLLQYKSGENYVIAMKLNRDALTA SKVVLRLYVSSISSSRTLRIYPYQSNGTSVNSYYSVSYSTSSAGWKDIDVTSIAQRMNGYGWMKFRVTTTSSSLYVAEGA FLVQ
Specific function: Unknown
COG id: COG3291
COG function: function code R; FOG: PKD repeat
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PKD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013510 - InterPro: IPR002169 - InterPro: IPR013661 - InterPro: IPR022409 - InterPro: IPR000601 [H]
Pfam domain/function: PF01752 Peptidase_M9; PF08453 Peptidase_M9_N; PF00801 PKD [H]
EC number: =3.4.24.3 [H]
Molecular weight: Translated: 92244; Mature: 92244
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: PS50093 PKD ; PS51007 CYTC L=RR ; PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 6.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 7.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRSRIITIFPQILMCLWGVAVMLTAGPGIVRDAQALTATDCTTCHTGSTYGSIPQQHHA CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCCCCCCCCCCCCCHHHHH VASSKGITCLQCHRAIPDGSGGFTIEVITDCIVCHGQVDHAAAHNMVATAADCAQCHTQT HHHCCCCEEEEHHHCCCCCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC PVAEHLSRTSSCSTCHSSTAPAVQKAITDGRAGVMVNCITCHGAVNHIVQHDRAFPSPDC HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCH VQCHAQGVVFEHLNRTSTCATCHASTQPAVQKAIADGRAGIAVYCVTCHGTVNHVLQHDK HHHHHCCHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCC VSTPADCSGCHNQGPVQEHTNRTSTCATCHNSSSTTVQQTITLGRTGTMVSCANCHGAVN CCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEHHHHHHHH HIQQHDKAMANADCAQCHNLGVVNEHLSRASTCATCHSSAAPAVQQAIAAGKAGTTVYCS HHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEC NCHANVNHVQQHDKVTTPADCASCHGQGVVYEHTNRSSTCATCHNSTNAAVQKTISDGRA CCCCCHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCCCEEEECCCCCHHHHHHHCCCCC GITVSCASCHGAVNHVAQHDQALASPACAQCHTKSVLDEHLTRTSTCATCHSSSSTAVQQ CEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH AIAAGRSGQAVSCVDCHGQVTHQSAHDGKVLVPYGDCSSCHIPNLVELHAVKGFQCAACH HHHCCCCCCEEEEEECCCCEECCCCCCCEEEEECCCCCCCCCCCCCEEHCCCCCEEEEEE ASDNASVTAAVQKGLGGTLVYCADCHSAIGGFGNHAGQHDMVGLPAPNCGQCHSDNAVTA CCCCCEEEHHHHCCCCCEEEEEECHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCEEE HEKAATPVYCNGCHTSTNELYVKTISDGMAGIQQNCRSCHTMIHGGANRGPSANAGADRT HHCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE VTVGQAITFSGSGSSDPDGSIVGYVWNFGDGTTGSGVSVTKTYTTAGTYTVTLTVTDNSG EEECEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEEEEECCCC DTASDTAVVTVQSQAGSSSVFADQVLYLQRLSSVTSSDSNSNDLTSKFRDSNLADRYLLQ CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEE YKSGENYVIAMKLNRDALTASKVVLRLYVSSISSSRTLRIYPYQSNGTSVNSYYSVSYST EECCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEECEEEEEEEEC SSAGWKDIDVTSIAQRMNGYGWMKFRVTTTSSSLYVAEGAFLVQ CCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCEEEEECCEEEEC >Mature Secondary Structure MNRSRIITIFPQILMCLWGVAVMLTAGPGIVRDAQALTATDCTTCHTGSTYGSIPQQHHA CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCCCCCCCCCCCCCHHHHH VASSKGITCLQCHRAIPDGSGGFTIEVITDCIVCHGQVDHAAAHNMVATAADCAQCHTQT HHHCCCCEEEEHHHCCCCCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC PVAEHLSRTSSCSTCHSSTAPAVQKAITDGRAGVMVNCITCHGAVNHIVQHDRAFPSPDC HHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCCCCH VQCHAQGVVFEHLNRTSTCATCHASTQPAVQKAIADGRAGIAVYCVTCHGTVNHVLQHDK HHHHHCCHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCC VSTPADCSGCHNQGPVQEHTNRTSTCATCHNSSSTTVQQTITLGRTGTMVSCANCHGAVN CCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEHHHHHHHH HIQQHDKAMANADCAQCHNLGVVNEHLSRASTCATCHSSAAPAVQQAIAAGKAGTTVYCS HHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEC NCHANVNHVQQHDKVTTPADCASCHGQGVVYEHTNRSSTCATCHNSTNAAVQKTISDGRA CCCCCHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCCCEEEECCCCCHHHHHHHCCCCC GITVSCASCHGAVNHVAQHDQALASPACAQCHTKSVLDEHLTRTSTCATCHSSSSTAVQQ CEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH AIAAGRSGQAVSCVDCHGQVTHQSAHDGKVLVPYGDCSSCHIPNLVELHAVKGFQCAACH HHHCCCCCCEEEEEECCCCEECCCCCCCEEEEECCCCCCCCCCCCCEEHCCCCCEEEEEE ASDNASVTAAVQKGLGGTLVYCADCHSAIGGFGNHAGQHDMVGLPAPNCGQCHSDNAVTA CCCCCEEEHHHHCCCCCEEEEEECHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCEEE HEKAATPVYCNGCHTSTNELYVKTISDGMAGIQQNCRSCHTMIHGGANRGPSANAGADRT HHCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE VTVGQAITFSGSGSSDPDGSIVGYVWNFGDGTTGSGVSVTKTYTTAGTYTVTLTVTDNSG EEECEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEEEEECCCC DTASDTAVVTVQSQAGSSSVFADQVLYLQRLSSVTSSDSNSNDLTSKFRDSNLADRYLLQ CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEE YKSGENYVIAMKLNRDALTASKVVLRLYVSSISSSRTLRIYPYQSNGTSVNSYYSVSYST EECCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEECEEEEEEEEC SSAGWKDIDVTSIAQRMNGYGWMKFRVTTTSSSLYVAEGAFLVQ CCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCEEEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1311172 [H]