Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 39997882

GI number: 39997882

Start: 3068098

End: 3070410

Strand: Reverse

Name: bphB [H]

Synonym: GSU2789

Alternate gene names: 39997882

Gene position: 3070410-3068098 (Counterclockwise)

Preceding gene: 39997883

Following gene: 39997879

Centisome position: 80.5

GC content: 63.86

Gene sequence:

>2313_bases
ATGATAATCTGCTATGCTCAGCCGACATTGCACAGAGATATCACCTGGTCGGCAAGGATGGTCGATTTCATGGCTTACGA
CGCGGCAAACGAAGAGTACAACGGACCCCCTGTGGACGCGGCAGCCTTCTGCGTTGCCGACGGCCAGGGGCGGCTGCTCG
ACGTCGGCGAGGGATTGTGTCTTTTGAGCGGCTACCCGCGGGCCGAGCTTCTCTCCCTGTCCCTGGCCGAGCTTGAAGCC
GGCGGTTCCGGCACATGGCACACCGCGTTGATAAACACGGCAACCTCGGGCAGCCCGGCCCGCGCCGAGATCGGGCTCAG
GCAGCGGGAAGGCGGTGTCAGGCAGGTGGAGGTGGAGGCGGCCTTCCTGCCGGCGCTGGGGCAGGTGATCCTCACCTTCA
GGGACAGTGCGATATTCTCGCGAGTCCTGGCAGAGTTGAGGCAGAAGTCGGAAGAATGCGACACCTACTTCCGCAACAGC
CTCGACCTGCTCTGCGTGGCCGACAACAGTGGGTATTTCCGGCGGCTCAACCCTGCATGGGAAGAGGTGCTCGGTTTCCC
TCTCCATGAGCTGCTCGGCAGGAAGTTCATCGACTTGGTGCACCCCGACGACCGCGAGGCGACGATGGGGGCTATGTCCG
ACCTTGCGCACCAACGGCAGGTGAAGGATTTTACCAATCGCTACCGCGTCCGGGACGGTTCGTACCGGTGGCTCGAATGG
CGCGCCGCACCGGCGGGGGACCTGGTGTTCGCCGTCGCGCGCGACGTGACGGACAGAATTCTCGCCCAGGAAAGGCTCTG
CCGGAGCGAAGAGCGATATCGCCTCCTGTTCGAGGAGATGATGAGCGGCTGCGCTCTCCACGAGTTGATCTGCGACCGGG
ACGGCAATCCCGCGGACTACCGGTTCCTGGCGGTGAACGGGGCCTTTGAGCGGATGACGGGGCTTCGGGCCGCCGACATC
GTCGGCAAGACGGTCCTTGAGGTGATGCCGGGCACCGAGCGCCACTGGATCGAGCGGTACGGGGACGTTGCCCTGTCGGG
GCGGTCGGCGGAGTTCGAAGAATACGCGGGCGCGATCGGGAGATACTACAGCGTCCGCGCCTACTGCCCTGAGAGGGGGA
AGTTCGCGGCGGTCTTCAACGACATCACCGAGCGCCGCCTCATGGAAGACGAGCTGCGGAGGCAGGAGCAGAGCCACCGG
CTCGTCCTCGACAACATCCCGGACATCATCGCGCGGTTCGACCGCGAGCTGCGCCATCTCTATGTGAGCGCCGCCATAAC
AAGGGTGACGGGGTTCCCGCCGGAGCACTTCATTGGCAGGACCAACCGGGAGATCGGCATGCCGGACGAACTGGTCGATC
GCTGGGATGCGGCGATCAACGAAGTCTTCTCGTCCGGGAGGGAACAGCGGCTCGAATTTACCTACCAGTCCCCTCGCGGC
CTGCGCCACTTTGAAACCACGCTGATCCCCGAACGGGGTGCGGACGATTCGTCCGCCGCGGTCCTGGTCGTAAACCACGA
TATTACCGAACTCAAGAACGCCGAACTGGGGATGCGGCAGCTGAACGAGGAGCTTGAACGGAGGGTGGGGGAGCGCACGA
GGGAGCTCGAGCTATCCAATCGCGAGCTGGATTCTTTCTGCTCGGCGGTTTCCCATGACCTGCGGGCGCCGCTGCGTCAC
ATTGCCGGGTTCAGCCGGGTCGTCGCGGAGGACTACGGCGACCGGCTCGACCACGGGGGCCGTGATCTGCTCACGCGGAT
CGAAGGCGGTGCCCAGAGGATGGATACCCTGATCAACGAGCTGCTTAGTCTCTCACGGACGAACCGTTCACCCCTGGAAT
GTCACCCCGTCAACCTGAGCACCATTGCGATGGACGTCGTGACCGACCTGCGGGAGGCCGCGCCGGACCGGCTGGTGGAC
ACGGAGATCGCGCCCGATGTCATGGCCCAGTGTGACGGCAACCTGATCCGCGTGGTATTGTCCAACCTGCTCGGCAATGC
CTGGAAATTCACCTCCCGCACTGAGCGGGCGCGCATCGAGTTCGGCGTTATTCCGTCGGGCGATCAGCAGACGTTTTTTG
TCAGGGATAACGGCGCGGGTTTCGACATGAATTTCGCCGACAAGCTTTTTGTCCCGTTTCAGCGGCTCCATGCCCGTGAT
GACTATGAAGGCACCGGCATCGGCCTCGCCACGGTCCAGAGGATCATCCATCGCCACGGCGGGAAAATATGGGCGGACGC
CGCTGCCGACCGCGGCGCCACCTTCTGGTTCACCCTCGGGGACTGCCTCGGCGGCAGACCTGTTTCGCCCTGA

Upstream 100 bases:

>100_bases
ACAACTGGCGAACGGATAGTAGGCGTCGAACGCCCCCCCCTGACTGATCTCACGGTTCACGGTACCCGCATCGGCGTGAT
CATAACTGTTTGTTTGATCA

Downstream 100 bases:

>100_bases
CTCCTACCCTGCCCGGTTGGTCCCGCACGAGCTCCAATCCAGTGTTTCCCCGCACAATAGCGTGCCTGCGCCTTTTCCTC
CACTCCTGCGCGGCGCGTCA

Product: sensory box histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 770; Mature: 770

Protein sequence:

>770_residues
MIICYAQPTLHRDITWSARMVDFMAYDAANEEYNGPPVDAAAFCVADGQGRLLDVGEGLCLLSGYPRAELLSLSLAELEA
GGSGTWHTALINTATSGSPARAEIGLRQREGGVRQVEVEAAFLPALGQVILTFRDSAIFSRVLAELRQKSEECDTYFRNS
LDLLCVADNSGYFRRLNPAWEEVLGFPLHELLGRKFIDLVHPDDREATMGAMSDLAHQRQVKDFTNRYRVRDGSYRWLEW
RAAPAGDLVFAVARDVTDRILAQERLCRSEERYRLLFEEMMSGCALHELICDRDGNPADYRFLAVNGAFERMTGLRAADI
VGKTVLEVMPGTERHWIERYGDVALSGRSAEFEEYAGAIGRYYSVRAYCPERGKFAAVFNDITERRLMEDELRRQEQSHR
LVLDNIPDIIARFDRELRHLYVSAAITRVTGFPPEHFIGRTNREIGMPDELVDRWDAAINEVFSSGREQRLEFTYQSPRG
LRHFETTLIPERGADDSSAAVLVVNHDITELKNAELGMRQLNEELERRVGERTRELELSNRELDSFCSAVSHDLRAPLRH
IAGFSRVVAEDYGDRLDHGGRDLLTRIEGGAQRMDTLINELLSLSRTNRSPLECHPVNLSTIAMDVVTDLREAAPDRLVD
TEIAPDVMAQCDGNLIRVVLSNLLGNAWKFTSRTERARIEFGVIPSGDQQTFFVRDNGAGFDMNFADKLFVPFQRLHARD
DYEGTGIGLATVQRIIHRHGGKIWADAAADRGATFWFTLGDCLGGRPVSP

Sequences:

>Translated_770_residues
MIICYAQPTLHRDITWSARMVDFMAYDAANEEYNGPPVDAAAFCVADGQGRLLDVGEGLCLLSGYPRAELLSLSLAELEA
GGSGTWHTALINTATSGSPARAEIGLRQREGGVRQVEVEAAFLPALGQVILTFRDSAIFSRVLAELRQKSEECDTYFRNS
LDLLCVADNSGYFRRLNPAWEEVLGFPLHELLGRKFIDLVHPDDREATMGAMSDLAHQRQVKDFTNRYRVRDGSYRWLEW
RAAPAGDLVFAVARDVTDRILAQERLCRSEERYRLLFEEMMSGCALHELICDRDGNPADYRFLAVNGAFERMTGLRAADI
VGKTVLEVMPGTERHWIERYGDVALSGRSAEFEEYAGAIGRYYSVRAYCPERGKFAAVFNDITERRLMEDELRRQEQSHR
LVLDNIPDIIARFDRELRHLYVSAAITRVTGFPPEHFIGRTNREIGMPDELVDRWDAAINEVFSSGREQRLEFTYQSPRG
LRHFETTLIPERGADDSSAAVLVVNHDITELKNAELGMRQLNEELERRVGERTRELELSNRELDSFCSAVSHDLRAPLRH
IAGFSRVVAEDYGDRLDHGGRDLLTRIEGGAQRMDTLINELLSLSRTNRSPLECHPVNLSTIAMDVVTDLREAAPDRLVD
TEIAPDVMAQCDGNLIRVVLSNLLGNAWKFTSRTERARIEFGVIPSGDQQTFFVRDNGAGFDMNFADKLFVPFQRLHARD
DYEGTGIGLATVQRIIHRHGGKIWADAAADRGATFWFTLGDCLGGRPVSP
>Mature_770_residues
MIICYAQPTLHRDITWSARMVDFMAYDAANEEYNGPPVDAAAFCVADGQGRLLDVGEGLCLLSGYPRAELLSLSLAELEA
GGSGTWHTALINTATSGSPARAEIGLRQREGGVRQVEVEAAFLPALGQVILTFRDSAIFSRVLAELRQKSEECDTYFRNS
LDLLCVADNSGYFRRLNPAWEEVLGFPLHELLGRKFIDLVHPDDREATMGAMSDLAHQRQVKDFTNRYRVRDGSYRWLEW
RAAPAGDLVFAVARDVTDRILAQERLCRSEERYRLLFEEMMSGCALHELICDRDGNPADYRFLAVNGAFERMTGLRAADI
VGKTVLEVMPGTERHWIERYGDVALSGRSAEFEEYAGAIGRYYSVRAYCPERGKFAAVFNDITERRLMEDELRRQEQSHR
LVLDNIPDIIARFDRELRHLYVSAAITRVTGFPPEHFIGRTNREIGMPDELVDRWDAAINEVFSSGREQRLEFTYQSPRG
LRHFETTLIPERGADDSSAAVLVVNHDITELKNAELGMRQLNEELERRVGERTRELELSNRELDSFCSAVSHDLRAPLRH
IAGFSRVVAEDYGDRLDHGGRDLLTRIEGGAQRMDTLINELLSLSRTNRSPLECHPVNLSTIAMDVVTDLREAAPDRLVD
TEIAPDVMAQCDGNLIRVVLSNLLGNAWKFTSRTERARIEFGVIPSGDQQTFFVRDNGAGFDMNFADKLFVPFQRLHARD
DYEGTGIGLATVQRIIHRHGGKIWADAAADRGATFWFTLGDCLGGRPVSP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=270, Percent_Identity=29.2592592592593, Blast_Score=93, Evalue=8e-20,
Organism=Escherichia coli, GI48994928, Length=248, Percent_Identity=28.6290322580645, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1788549, Length=414, Percent_Identity=24.6376811594203, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI145693157, Length=242, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1790436, Length=246, Percent_Identity=28.8617886178862, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081816, Length=271, Percent_Identity=27.3062730627306, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787894, Length=218, Percent_Identity=30.7339449541284, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1790346, Length=208, Percent_Identity=27.4038461538462, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1786600, Length=230, Percent_Identity=26.5217391304348, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1786912, Length=218, Percent_Identity=27.0642201834862, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86686; Mature: 86686

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIICYAQPTLHRDITWSARMVDFMAYDAANEEYNGPPVDAAAFCVADGQGRLLDVGEGLC
CEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEECCCCCEEECCCCEE
LLSGYPRAELLSLSLAELEAGGSGTWHTALINTATSGSPARAEIGLRQREGGVRQVEVEA
EECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHCCCHHHCCCCEEEEEHH
AFLPALGQVILTFRDSAIFSRVLAELRQKSEECDTYFRNSLDLLCVADNSGYFRRLNPAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHH
EEVLGFPLHELLGRKFIDLVHPDDREATMGAMSDLAHQRQVKDFTNRYRVRDGSYRWLEW
HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEE
RAAPAGDLVFAVARDVTDRILAQERLCRSEERYRLLFEEMMSGCALHELICDRDGNPADY
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCE
RFLAVNGAFERMTGLRAADIVGKTVLEVMPGTERHWIERYGDVALSGRSAEFEEYAGAIG
EEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCHHHHHHHHH
RYYSVRAYCPERGKFAAVFNDITERRLMEDELRRQEQSHRLVLDNIPDIIARFDRELRHL
HHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHH
YVSAAITRVTGFPPEHFIGRTNREIGMPDELVDRWDAAINEVFSSGREQRLEFTYQSPRG
HHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCC
LRHFETTLIPERGADDSSAAVLVVNHDITELKNAELGMRQLNEELERRVGERTRELELSN
CHHHHHHCCCCCCCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCC
RELDSFCSAVSHDLRAPLRHIAGFSRVVAEDYGDRLDHGGRDLLTRIEGGAQRMDTLINE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHH
LLSLSRTNRSPLECHPVNLSTIAMDVVTDLREAAPDRLVDTEIAPDVMAQCDGNLIRVVL
HHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHCCCHHHHHHH
SNLLGNAWKFTSRTERARIEFGVIPSGDQQTFFVRDNGAGFDMNFADKLFVPFQRLHARD
HHHHCCCEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
DYEGTGIGLATVQRIIHRHGGKIWADAAADRGATFWFTLGDCLGGRPVSP
CCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEHHHHCCCCCCCC
>Mature Secondary Structure
MIICYAQPTLHRDITWSARMVDFMAYDAANEEYNGPPVDAAAFCVADGQGRLLDVGEGLC
CEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEECCCCCEEECCCCEE
LLSGYPRAELLSLSLAELEAGGSGTWHTALINTATSGSPARAEIGLRQREGGVRQVEVEA
EECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHCCCHHHCCCCEEEEEHH
AFLPALGQVILTFRDSAIFSRVLAELRQKSEECDTYFRNSLDLLCVADNSGYFRRLNPAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHH
EEVLGFPLHELLGRKFIDLVHPDDREATMGAMSDLAHQRQVKDFTNRYRVRDGSYRWLEW
HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEE
RAAPAGDLVFAVARDVTDRILAQERLCRSEERYRLLFEEMMSGCALHELICDRDGNPADY
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCE
RFLAVNGAFERMTGLRAADIVGKTVLEVMPGTERHWIERYGDVALSGRSAEFEEYAGAIG
EEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHCCEEECCCCCCHHHHHHHHH
RYYSVRAYCPERGKFAAVFNDITERRLMEDELRRQEQSHRLVLDNIPDIIARFDRELRHL
HHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHH
YVSAAITRVTGFPPEHFIGRTNREIGMPDELVDRWDAAINEVFSSGREQRLEFTYQSPRG
HHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCC
LRHFETTLIPERGADDSSAAVLVVNHDITELKNAELGMRQLNEELERRVGERTRELELSN
CHHHHHHCCCCCCCCCCCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCC
RELDSFCSAVSHDLRAPLRHIAGFSRVVAEDYGDRLDHGGRDLLTRIEGGAQRMDTLINE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHH
LLSLSRTNRSPLECHPVNLSTIAMDVVTDLREAAPDRLVDTEIAPDVMAQCDGNLIRVVL
HHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHCCCHHHHHHH
SNLLGNAWKFTSRTERARIEFGVIPSGDQQTFFVRDNGAGFDMNFADKLFVPFQRLHARD
HHHHCCCEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
DYEGTGIGLATVQRIIHRHGGKIWADAAADRGATFWFTLGDCLGGRPVSP
CCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]